Cryo-EM structure of E. coli RNAP sigma32 complex
Resolution: 2.49 Å
EM Method: Single-particle
Fitted PDBs: 8hkc
Q-score: 0.582
Lu Q, Chen T, Wang J, Wang F, Ye W, Ma L, Wu S
Biomolecules (2023) 13 [ DOI: doi:10.3390/biom13050738 Pubmed: 37238608 ]
- Dna (54-mer) (16 kDa, DNA from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Rna polymerase sigma factor rpoh (32 kDa, Protein from Escherichia coli K-12)
- Cryo-em structure of e. coli rnap sigma32 complex (Complex from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (151 kDa, Protein from Escherichia coli K-12)
- Dna (54-mer) (16 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta' (157 kDa, Protein from Escherichia coli K-12)
Human Kv4.2-KChIP2 channel complex in an open state, transmembrane region
Human Kv4.2-KChIP2 channel complex in an inactivated state, class 1, transmembrane region
Human Kv4.2-KChIP2 channel complex in an inactivated state, class 2, transmembrane region
Human Kv4.2-KChIP2 channel complex in an intermediate state, transmembrane region
Human Kv4.2-KChIP2 channel complex in a putative resting state, transmembrane region
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 7ukf
Q-score: 0.478
Ye W, Zhao H, Dai Y, Wang Y, Lo YH, Jan LY, Lee CH
Mol Cell (2022) 82 pp. 2427- [ Pubmed: 35597238 DOI: doi:10.1016/j.molcel.2022.04.032 ]
- Potassium voltage-gated channel subfamily d member 2 (59 kDa, Protein from Homo sapiens)
- Mercury (ii) ion (200 Da, Ligand)
- Human kv4.2-kchip2 channel complex in a putative resting state, transmembrane region (Complex from Homo sapiens)
- Potassium ion (39 Da, Ligand)
Human Kv4.2-KChIP2-DPP6 channel complex in an open state, transmembrane region
Resolution: 2.24 Å
EM Method: Single-particle
Fitted PDBs: 7ukg
Q-score: 0.636
Ye W, Zhao H, Dai Y, Wang Y, Lo YH, Jan LY, Lee CH
Mol Cell (2022) 82 pp. 2427- [ Pubmed: 35597238 DOI: doi:10.1016/j.molcel.2022.04.032 ]
- Potassium voltage-gated channel subfamily d member 2 (59 kDa, Protein from Homo sapiens)
- Human kv4.2-kchip2-dpp6 channel complex in an open state, transmembrane region (Complex from Homo sapiens)
- Dipeptidyl-peptidase 6 (91 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
Human Kv4.2-KChIP2-DPP6 channel complex in an open state, intracellular region
Resolution: 2.33 Å
EM Method: Single-particle
Fitted PDBs: 7ukh
Q-score: 0.607
Ye W, Zhao H, Dai Y, Wang Y, Lo YH, Jan LY, Lee CH
Mol Cell (2022) 82 pp. 2427- [ Pubmed: 35597238 DOI: doi:10.1016/j.molcel.2022.04.032 ]
- Potassium voltage-gated channel subfamily d member 2 (59 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Isoform 2 of kv channel-interacting protein 2 (28 kDa, Protein from Homo sapiens)
- Human kv4.2-kchip2-dpp6 channel complex in an open state, intracellular region (Complex from Homo sapiens)
cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, two RBDs bound
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7kmk
Q-score: 0.191
Miersch S, Li Z, Saberianfar R, Ustav M, Brett Case J, Blazer L, Chen C, Ye W, Pavlenco A, Gorelik M, Garcia Perez J, Subramania S, Singh S, Ploder L, Ganaie S, Chen RE, Leung DW, Pandolfi PP, Novelli G, Matusali G, Colavita F, Capobianchi MR, Jain S, Gupta JB, Amarasinghe GK, Diamond MS, Rini J, Sidhu SS
J Mol Biol (2021) 433 pp. 167177-167177 [ DOI: doi:10.1016/j.jmb.2021.167177 Pubmed: 34329642 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 15033-7 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein in complex with fab 15033-7 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab 15033-7 heavy chain (23 kDa, Protein from Homo sapiens)
cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, three RBDs bound
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7kml
Q-score: 0.23
Miersch S, Li Z, Saberianfar R, Ustav M, Brett Case J, Blazer L, Chen C, Ye W, Pavlenco A, Gorelik M, Garcia Perez J, Subramania S, Singh S, Ploder L, Ganaie S, Chen RE, Leung DW, Pandolfi PP, Novelli G, Matusali G, Colavita F, Capobianchi MR, Jain S, Gupta JB, Amarasinghe GK, Diamond MS, Rini J, Sidhu SS
J Mol Biol (2021) 433 pp. 167177-167177 [ DOI: doi:10.1016/j.jmb.2021.167177 Pubmed: 34329642 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 15033-7 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein in complex with fab 15033-7 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab 15033-7 heavy chain (23 kDa, Protein from Homo sapiens)