human NaS1 intermediate state 2
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 8y5w
Q-score: 0.579
Chen X, Zhang Y, Yin J, Liu C, Xie M, Wang Y, Chen M, Zhang R, Yuan X, Li D, Chen X, Gao X, Cai G, Zhang S, Zhou B, Yang M
Sci Adv (2024) 10 pp. eado6778-eado6778 [ Pubmed: 39576865 DOI: doi:10.1126/sciadv.ado6778 ]
- Sodium ion (22 Da, Ligand)
- Membrane sodium anion transproter 2 (Complex from Homo sapiens)
- Sulfate ion (96 Da, Ligand)
- Solute carrier family 13 member 1 (66 kDa, Protein from Homo sapiens)
human NaS1 intermediate state 3
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 8y5x
Q-score: 0.484
Chen X, Zhang Y, Yin J, Liu C, Xie M, Wang Y, Chen M, Zhang R, Yuan X, Li D, Chen X, Gao X, Cai G, Zhang S, Zhou B, Yang M
Sci Adv (2024) 10 pp. eado6778-eado6778 [ Pubmed: 39576865 DOI: doi:10.1126/sciadv.ado6778 ]
- Solute carrier family 13 member 1 (66 kDa, Protein from Homo sapiens)
- Membrane sodium anion transproter 3 (Cellular component from Homo sapiens)
- Sodium ion (22 Da, Ligand)
- Sulfate ion (96 Da, Ligand)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8y5y
Q-score: 0.443
Chen X, Zhang Y, Yin J, Liu C, Xie M, Wang Y, Chen M, Zhang R, Yuan X, Li D, Chen X, Gao X, Cai G, Zhang S, Zhou B, Yang M
Sci Adv (2024) 10 pp. eado6778-eado6778 [ Pubmed: 39576865 DOI: doi:10.1126/sciadv.ado6778 ]
- Solute carrier family 13 member 1 (66 kDa, Protein from Homo sapiens)
- Sulfate ion (96 Da, Ligand)
- Membrane sodium anion transproter out (Complex from Homo sapiens)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8y5z
Q-score: 0.474
Chen X, Zhang Y, Yin J, Liu C, Xie M, Wang Y, Chen M, Zhang R, Yuan X, Li D, Chen X, Gao X, Cai G, Zhang S, Zhou B, Yang M
Sci Adv (2024) 10 pp. eado6778-eado6778 [ Pubmed: 39576865 DOI: doi:10.1126/sciadv.ado6778 ]
- Solute carrier family 13 member 1 (66 kDa, Protein from Homo sapiens)
- Sodium ion (22 Da, Ligand)
- Membrane sodium anion transproter in (Complex from Homo sapiens)
- Sulfate ion (96 Da, Ligand)
DmDcr-2/R2D2/LoqsPD with 50bp-dsRNA in Dimer state
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 8hf0
Q-score: 0.372
Deng T, Su S, Yuan X, He J, Huang Y, Ma J, Wang J
Nat Commun (2023) 14 pp. 5228-5228 [ DOI: doi:10.1038/s41467-023-40919-1 Pubmed: 37633971 ]
- Loquacious, isoform d (38 kDa, Protein from Drosophila melanogaster)
- Rna (52-mer) (16 kDa, RNA from Drosophila melanogaster)
- Dmdcr-2/r2d2/loqspd with 50bp-dsrna in dimer state (300 kDa, Complex from Drosophila melanogaster)
- Dicer-2, isoform a (198 kDa, Protein from Drosophila melanogaster)
- Ld06392p (35 kDa, Protein from Drosophila melanogaster)
Structure of human inner kinetochore CCAN-DNA complex
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 7xhn
Q-score: 0.321
Tian T, Chen L, Dou Z, Yang Z, Gao X, Yuan X, Wang C, Liu R, Shen Z, Gui P, Teng M, Meng X, Hill DL, Li L, Zhang X, Liu X, Sun L, Zang J, Yao X
Cell Discov (2022) 8 pp. 90-90 [ DOI: doi:10.1038/s41421-022-00439-6 Pubmed: 36085283 ]
- Dna (25-mer) (7 kDa, DNA from Homo sapiens)
- Centromere protein m (19 kDa, Protein from Homo sapiens)
- Dna (25-mer) (7 kDa, DNA from Homo sapiens)
- Centromere protein s (15 kDa, Protein from Homo sapiens)
- Centromere protein c (107 kDa, Protein from Homo sapiens)
- Cenp-w (10 kDa, Protein from Homo sapiens)
- Centromere protein o (33 kDa, Protein from Homo sapiens)
- Centromere protein u (47 kDa, Protein from Homo sapiens)
- Centromere protein k (31 kDa, Protein from Homo sapiens)
- Centromere protein t (60 kDa, Protein from Homo sapiens)
- Centromere protein x (8 kDa, Protein from Homo sapiens)
- Centromere protein l (39 kDa, Protein from Homo sapiens)
- Centromere protein h (29 kDa, Protein from Homo sapiens)
- Centromere protein i (86 kDa, Protein from Homo sapiens)
- Ccan-dna (Complex from Homo sapiens)
- Centromere protein q (31 kDa, Protein from Homo sapiens)
- Centromere protein n (40 kDa, Protein from Homo sapiens)
- Centromere protein p (33 kDa, Protein from Homo sapiens)
- Centromere protein r (20 kDa, Protein from Homo sapiens)
Structure of human inner kinetochore CCAN complex
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 7xho
Q-score: 0.366
Tian T, Chen L, Dou Z, Yang Z, Gao X, Yuan X, Wang C, Liu R, Shen Z, Gui P, Teng M, Meng X, Hill DL, Li L, Zhang X, Liu X, Sun L, Zang J, Yao X
Cell Discov (2022) 8 pp. 90-90 [ DOI: doi:10.1038/s41421-022-00439-6 Pubmed: 36085283 ]
- Centromere protein i (86 kDa, Protein from Homo sapiens)
- Centromere protein m (19 kDa, Protein from Homo sapiens)
- Centromere protein c (107 kDa, Protein from Homo sapiens)
- Centromere protein o (33 kDa, Protein from Homo sapiens)
- Centromere protein h (28 kDa, Protein from Homo sapiens)
- Centromere protein k (31 kDa, Protein from Homo sapiens)
- Ccan (Complex from Homo sapiens)
- Centromere protein t (60 kDa, Protein from Homo sapiens)
- Centromere protein u (47 kDa, Protein from Homo sapiens)
- Centromere protein q (30 kDa, Protein from Homo sapiens)
- Centromere protein x (8 kDa, Protein from Homo sapiens)
- Centromere protein n (39 kDa, Protein from Homo sapiens)
- Centromere protein p (33 kDa, Protein from Homo sapiens)
- Cenp-w (10 kDa, Protein from Homo sapiens)
- Centromere protein r (20 kDa, Protein from Homo sapiens)
- Centromere protein l (39 kDa, Protein from Homo sapiens)
- Centromere protein s (15 kDa, Protein from Homo sapiens)
dmDicer2-LoqsPD-dsRNA Dimer status
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 7w0a
Q-score: 0.51
Su S, Wang J, Deng T, Yuan X, He J, Liu N, Li X, Huang Y, Wang HW, Ma J
Nature (2022) 607 pp. 399-406 [ Pubmed: 35768513 DOI: doi:10.1038/s41586-022-04911-x ]
- Rna (32-mer) (10 kDa, RNA from Spodoptera frugiperda)
- Rna (30-mer) (10 kDa, RNA from Drosophila melanogaster)
- Dicer2-loqspd-dsrna complex at its initial binding state (Complex from Drosophila melanogaster)
- Loquacious, isoform d (38 kDa, Protein from Drosophila melanogaster)
- Dicer-2, isoform a (198 kDa, Protein from Drosophila melanogaster)
Dicer2-LoqsPD complex at apo status
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7w0b
Q-score: 0.339
Su S, Wang J, Deng T, Yuan X, He J, Liu N, Li X, Huang Y, Wang HW, Ma J
Nature (2022) 607 pp. 399-406 [ Pubmed: 35768513 DOI: doi:10.1038/s41586-022-04911-x ]
- Loquacious, isoform d (38 kDa, Protein from Drosophila melanogaster)
- Dicer-2, isoform a (198 kDa, Protein from Drosophila melanogaster)
- Dicer2-loqspd complex at its apo status (Complex from Drosophila melanogaster)