Structure of human inner kinetochore CCAN-DNA complex
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 7xhn
Q-score: 0.321
Tian T, Chen L, Dou Z, Yang Z, Gao X, Yuan X, Wang C, Liu R, Shen Z, Gui P, Teng M, Meng X, Hill DL, Li L, Zhang X, Liu X, Sun L, Zang J, Yao X
Cell Discov (2022) 8 pp. 90-90 [ DOI: doi:10.1038/s41421-022-00439-6 Pubmed: 36085283 ]
- Centromere protein l (39 kDa, Protein from Homo sapiens)
- Ccan-dna (Complex from Homo sapiens)
- Centromere protein p (33 kDa, Protein from Homo sapiens)
- Centromere protein t (60 kDa, Protein from Homo sapiens)
- Dna (25-mer) (7 kDa, DNA from Homo sapiens)
- Centromere protein r (20 kDa, Protein from Homo sapiens)
- Centromere protein i (86 kDa, Protein from Homo sapiens)
- Centromere protein n (40 kDa, Protein from Homo sapiens)
- Centromere protein h (29 kDa, Protein from Homo sapiens)
- Centromere protein x (8 kDa, Protein from Homo sapiens)
- Centromere protein q (31 kDa, Protein from Homo sapiens)
- Centromere protein k (31 kDa, Protein from Homo sapiens)
- Dna (25-mer) (7 kDa, DNA from Homo sapiens)
- Centromere protein c (107 kDa, Protein from Homo sapiens)
- Cenp-w (10 kDa, Protein from Homo sapiens)
- Centromere protein u (47 kDa, Protein from Homo sapiens)
- Centromere protein s (15 kDa, Protein from Homo sapiens)
- Centromere protein m (19 kDa, Protein from Homo sapiens)
- Centromere protein o (33 kDa, Protein from Homo sapiens)
Structure of human inner kinetochore CCAN complex
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 7xho
Q-score: 0.366
Tian T, Chen L, Dou Z, Yang Z, Gao X, Yuan X, Wang C, Liu R, Shen Z, Gui P, Teng M, Meng X, Hill DL, Li L, Zhang X, Liu X, Sun L, Zang J, Yao X
Cell Discov (2022) 8 pp. 90-90 [ DOI: doi:10.1038/s41421-022-00439-6 Pubmed: 36085283 ]
- Centromere protein u (47 kDa, Protein from Homo sapiens)
- Centromere protein q (30 kDa, Protein from Homo sapiens)
- Centromere protein h (28 kDa, Protein from Homo sapiens)
- Centromere protein k (31 kDa, Protein from Homo sapiens)
- Ccan (Complex from Homo sapiens)
- Centromere protein i (86 kDa, Protein from Homo sapiens)
- Centromere protein l (39 kDa, Protein from Homo sapiens)
- Centromere protein p (33 kDa, Protein from Homo sapiens)
- Cenp-w (10 kDa, Protein from Homo sapiens)
- Centromere protein t (60 kDa, Protein from Homo sapiens)
- Centromere protein x (8 kDa, Protein from Homo sapiens)
- Centromere protein n (39 kDa, Protein from Homo sapiens)
- Centromere protein s (15 kDa, Protein from Homo sapiens)
- Centromere protein m (19 kDa, Protein from Homo sapiens)
- Centromere protein r (20 kDa, Protein from Homo sapiens)
- Centromere protein c (107 kDa, Protein from Homo sapiens)
- Centromere protein o (33 kDa, Protein from Homo sapiens)
dmDicer2-LoqsPD-dsRNA Dimer status
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 7w0a
Q-score: 0.51
Su S, Wang J, Deng T, Yuan X, He J, Liu N, Li X, Huang Y, Wang HW, Ma J
Nature (2022) 607 pp. 399-406 [ Pubmed: 35768513 DOI: doi:10.1038/s41586-022-04911-x ]
- Dicer2-loqspd-dsrna complex at its initial binding state (Complex from Drosophila melanogaster)
- Rna (30-mer) (10 kDa, RNA from Drosophila melanogaster)
- Rna (32-mer) (10 kDa, RNA from Spodoptera frugiperda)
- Dicer-2, isoform a (198 kDa, Protein from Drosophila melanogaster)
- Loquacious, isoform d (38 kDa, Protein from Drosophila melanogaster)
Dicer2-LoqsPD complex at apo status
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7w0b
Q-score: 0.339
Su S, Wang J, Deng T, Yuan X, He J, Liu N, Li X, Huang Y, Wang HW, Ma J
Nature (2022) 607 pp. 399-406 [ Pubmed: 35768513 DOI: doi:10.1038/s41586-022-04911-x ]
- Loquacious, isoform d (38 kDa, Protein from Drosophila melanogaster)
- Dicer2-loqspd complex at its apo status (Complex from Drosophila melanogaster)
- Dicer-2, isoform a (198 kDa, Protein from Drosophila melanogaster)
Dicer2-Loqs-PD-dsRNA complex at early-translocation state
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 7w0c
Q-score: 0.339
Su S, Wang J, Deng T, Yuan X, He J, Liu N, Li X, Huang Y, Wang HW, Ma J
Nature (2022) 607 pp. 399-406 [ Pubmed: 35768513 DOI: doi:10.1038/s41586-022-04911-x ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dicer2-loqspd-dsrna complex at its early-translocation state (Complex from Drosophila melanogaster)
- Magnesium ion (24 Da, Ligand)
- Dicer-2, isoform a (198 kDa, Protein from Drosophila melanogaster)
- Loquacious, isoform d (38 kDa, Protein from Drosophila melanogaster)
- Rna (35-mer) (16 kDa, RNA from Drosophila melanogaster)
Dicer2-LoqsPD-dsRNA complex at mid-translocation state
Resolution: 4.18 Å
EM Method: Single-particle
Fitted PDBs: 7w0d
Q-score: 0.318
Su S, Wang J, Deng T, Yuan X, He J, Liu N, Li X, Huang Y, Wang HW, Ma J
Nature (2022) 607 pp. 399-406 [ Pubmed: 35768513 DOI: doi:10.1038/s41586-022-04911-x ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dsrna (16 kDa, RNA from Drosophila melanogaster)
- Dicer2-loqspd-dsrna complex at its mid-translocation state (Complex from Drosophila melanogaster)
- Magnesium ion (24 Da, Ligand)
- Dicer-2, isoform a (198 kDa, Protein from Drosophila melanogaster)
- Loquacious, isoform d (38 kDa, Protein from Drosophila melanogaster)
dmDicer2-LoqsPD-dsRNA Active-dicing status
Resolution: 4.03 Å
EM Method: Single-particle
Fitted PDBs: 7w0e
Q-score: 0.366
Su S, Wang J, Deng T, Yuan X, He J, Liu N, Li X, Huang Y, Wang HW, Ma J
Nature (2022) 607 pp. 399-406 [ Pubmed: 35768513 DOI: doi:10.1038/s41586-022-04911-x ]
- Dsrna (16 kDa, RNA from Drosophila melanogaster)
- Dicer2-loqspd-dsrna complex at its active-dicing state (Complex from Drosophila melanogaster)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dicer-2, isoform a (198 kDa, Protein from Drosophila melanogaster)
- Loquacious, isoform d (38 kDa, Protein from Drosophila melanogaster)
dmDicer2-LoqsPD-dsRNA Post-dicing status
Resolution: 4.55 Å
EM Method: Single-particle
Fitted PDBs: 7w0f
Q-score: 0.113
Su S, Wang J, Deng T, Yuan X, He J, Liu N, Li X, Huang Y, Wang HW, Ma J
Nature (2022) 607 pp. 399-406 [ Pubmed: 35768513 DOI: doi:10.1038/s41586-022-04911-x ]
- Loquacious, isoform d (38 kDa, Protein from Drosophila melanogaster)
- Dicer2-loqspd-dsrna complex at its post-dicing state (Complex from Drosophila melanogaster)
- Dicer-2, isoform a (198 kDa, Protein from Drosophila melanogaster)
- Sirna (16 kDa, RNA from Drosophila melanogaster)