CryoEM structure of human XPR1 in complex with phosphate in state A
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9j51
Q-score: 0.468
Zhang W, Chen Y, Guan Z, Wang Y, Tang M, Du Z, Zhang J, Cheng M, Zuo J, Liu Y, Wang Q, Liu Y, Zhang D, Yin P, Ma L, Liu Z
Nat Commun (2025) 16 pp. 18-18 [ DOI: doi:10.1038/s41467-024-55471-9 Pubmed: 39747008 ]
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- Solute carrier family 53 member 1 (84 kDa, Protein from Homo sapiens)
- Human xpr1 (Complex from Homo sapiens)
CryoEM structure of human XPR1 in complex with phosphate in state B
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9j52
Q-score: 0.468
Zhang W, Chen Y, Guan Z, Wang Y, Tang M, Du Z, Zhang J, Cheng M, Zuo J, Liu Y, Wang Q, Liu Y, Zhang D, Yin P, Ma L, Liu Z
Nat Commun (2025) 16 pp. 18-18 [ DOI: doi:10.1038/s41467-024-55471-9 Pubmed: 39747008 ]
- Solute carrier family 53 member 1 (84 kDa, Protein from Homo sapiens)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Human xpr1 (Complex from Homo sapiens)
- Phosphate ion (94 Da, Ligand)
CryoEM structure of human XPR1 in complex with phosphate in state C
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9j53
Q-score: 0.413
Zhang W, Chen Y, Guan Z, Wang Y, Tang M, Du Z, Zhang J, Cheng M, Zuo J, Liu Y, Wang Q, Liu Y, Zhang D, Yin P, Ma L, Liu Z
Nat Commun (2025) 16 pp. 18-18 [ DOI: doi:10.1038/s41467-024-55471-9 Pubmed: 39747008 ]
- Solute carrier family 53 member 1 (84 kDa, Protein from Homo sapiens)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Human xpr1 (Complex from Homo sapiens)
- Phosphate ion (94 Da, Ligand)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9jm0
Q-score: 0.492
Wang Y, Wang C, Guan Z, Cao J, Xu J, Wang S, Cui Y, Wang Q, Chen Y, Yin Y, Zhang D, Liu H, Sun M, Jin S, Tao P, Zou T
Cell Rep (2024) 43 pp. 114857-114857 [ DOI: doi:10.1016/j.celrep.2024.114857 Pubmed: 39395169 ]
- Dna (85-mer) (26 kDa, DNA from Escherichia coli)
- Retron ec86 reverse transcriptase (37 kDa, Protein from Escherichia coli)
- [(2r,3s,4r,5r)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[[(2r,3s,4r,5s)-3,4,5-trihydroxyoxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate (559 Da, Ligand)
- Rna (82-mer) (26 kDa, RNA from Escherichia coli)
- Retron ec86 putative ribosyltransferase/dna-binding protein (35 kDa, Protein from Escherichia coli)
- Nicotinamide (122 Da, Ligand)
- Retron ec86-effector fiber (Complex from Escherichia coli)
- Rna (5'-r(p*cp*gp*up*ap*ap*gp*gp*gp*up*gp*cp*gp*cp*a)-3') (4 kDa, RNA from Escherichia coli)
CryoEM structure of human XPR1 in apo state
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9j4x
Q-score: 0.554
Zhang W, Chen Y, Guan Z, Wang Y, Tang M, Du Z, Zhang J, Cheng M, Zuo J, Liu Y, Wang Q, Liu Y, Zhang D, Yin P, Ma L, Liu Z
Nat Commun (2025) 16 pp. 18-18 [ DOI: doi:10.1038/s41467-024-55471-9 Pubmed: 39747008 ]
- Solute carrier family 53 member 1 (84 kDa, Protein from Homo sapiens)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Human xpr1 (Complex from Homo sapiens)
Portal protein of empty Haloferax tailed virus 1.
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 8qsi
Q-score: 0.532
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Magnesium ion (24 Da, Ligand)
- Portal protein (75 kDa, Protein from Haloferax tailed virus 1)
- Hk97 gp6-like/spp1 gp15-like head-tail connector (15 kDa, Protein from Haloferax tailed virus 1)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
Portal capsid interface of full Haloferax tailed virus 1.
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8qsy
Q-score: 0.571
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Potassium ion (39 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Portal protein (75 kDa, Protein from Haloferax tailed virus 1)
- Hk97 gp6-like/spp1 gp15-like head-tail connector (15 kDa, Protein from Haloferax tailed virus 1)
- Capsid stabilization protein (13 kDa, Protein from Haloferax tailed virus 1)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
- Hypothetical protein gp21 (9 kDa, Protein from Haloferax tailed virus 1)
- Hk97 gp5-like major capsid protein (43 kDa, Protein from Haloferax tailed virus 1)
Portal protein of full Haloferax tailed virus 1.
Resolution: 2.342 Å
EM Method: Single-particle
Fitted PDBs: 8qqn
Q-score: 0.561
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Hk97 gp6-like/spp1 gp15-like head-tail connector (15 kDa, Protein from Haloferax tailed virus 1)
- Magnesium ion (24 Da, Ligand)
- Portal protein (75 kDa, Protein from Haloferax tailed virus 1)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
Turret of Haloferax tailed virus 1
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8qpg
Q-score: 0.588
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Gp30 (12 kDa, Protein from Haloferax tailed virus 1)
- Magnesium ion (24 Da, Ligand)
- Prokaryotic polysaccharide deacetylase (45 kDa, Protein from Haloferax tailed virus 1)
- Zinc ion (65 Da, Ligand)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8qpq
Q-score: 0.538
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Gp30 (12 kDa, Protein from Haloferax tailed virus 1)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
- Hk97 gp5-like major capsid protein (43 kDa, Protein from Haloferax tailed virus 1)
- Prokaryotic polysaccharide deacetylase (45 kDa, Protein from Haloferax tailed virus 1)