Portal protein of empty Haloferax tailed virus 1.
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 8qsi
Q-score: 0.532
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Magnesium ion (24 Da, Ligand)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
- Portal protein (75 kDa, Protein from Haloferax tailed virus 1)
- Hk97 gp6-like/spp1 gp15-like head-tail connector (15 kDa, Protein from Haloferax tailed virus 1)
Portal capsid interface of full Haloferax tailed virus 1.
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8qsy
Q-score: 0.571
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Hypothetical protein gp21 (9 kDa, Protein from Haloferax tailed virus 1)
- Magnesium ion (24 Da, Ligand)
- Hk97 gp5-like major capsid protein (43 kDa, Protein from Haloferax tailed virus 1)
- Potassium ion (39 Da, Ligand)
- Capsid stabilization protein (13 kDa, Protein from Haloferax tailed virus 1)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
- Portal protein (75 kDa, Protein from Haloferax tailed virus 1)
- Hk97 gp6-like/spp1 gp15-like head-tail connector (15 kDa, Protein from Haloferax tailed virus 1)
Portal protein of full Haloferax tailed virus 1.
Resolution: 2.342 Å
EM Method: Single-particle
Fitted PDBs: 8qqn
Q-score: 0.561
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Magnesium ion (24 Da, Ligand)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
- Portal protein (75 kDa, Protein from Haloferax tailed virus 1)
- Hk97 gp6-like/spp1 gp15-like head-tail connector (15 kDa, Protein from Haloferax tailed virus 1)
Turret of Haloferax tailed virus 1
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8qpg
Q-score: 0.588
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Prokaryotic polysaccharide deacetylase (45 kDa, Protein from Haloferax tailed virus 1)
- Gp30 (12 kDa, Protein from Haloferax tailed virus 1)
- Magnesium ion (24 Da, Ligand)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
- Zinc ion (65 Da, Ligand)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8qpq
Q-score: 0.538
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Prokaryotic polysaccharide deacetylase (45 kDa, Protein from Haloferax tailed virus 1)
- Gp30 (12 kDa, Protein from Haloferax tailed virus 1)
- Magnesium ion (24 Da, Ligand)
- Hk97 gp5-like major capsid protein (43 kDa, Protein from Haloferax tailed virus 1)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
- Zinc ion (65 Da, Ligand)
Active state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8c1p
Q-score: 0.561
Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Stockwell I, Baradaran R, Cais O, Greger IH
Nature (2023) 621 pp. 877-882 [ Pubmed: 37704721 DOI: doi:10.1038/s41586-023-06528-0 ]
- (2r)-2,3-dihydroxypropyl (9z)-octadec-9-enoate (356 Da, Ligand)
- Homomeric glua1 ampa receptor in complex with tarp gamma 3 (Complex from Rattus)
- Water (18 Da, Ligand)
- Voltage-dependent calcium channel gamma-3 subunit (35 kDa, Protein from Rattus norvegicus)
- Glutamic acid (147 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Glutamate receptor 1 flip isoform (102 kDa, Protein from Rattus norvegicus)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Cyclothiazide (389 Da, Ligand)
Resting state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 8c1q
Q-score: 0.54
Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Stockwell I, Baradaran R, Cais O, Greger IH
Nature (2023) 621 pp. 877-882 [ Pubmed: 37704721 DOI: doi:10.1038/s41586-023-06528-0 ]
- (2r)-2,3-dihydroxypropyl (9z)-octadec-9-enoate (356 Da, Ligand)
- Homomeric glua1 ampa receptor in complex with tarp gamma 3 (Complex from Rattus)
- Water (18 Da, Ligand)
- {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2h)-yl]methyl}phosphonic acid (409 Da, Ligand)
- Voltage-dependent calcium channel gamma-3 subunit (35 kDa, Protein from Rattus norvegicus)
- Palmitic acid (256 Da, Ligand)
- Glutamate receptor 1 flip isoform (102 kDa, Protein from Rattus norvegicus)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
Resting state homomeric GluA2 F231A mutant AMPA receptor in complex with TARP gamma-2
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8c1r
Q-score: 0.55
Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Stockwell I, Baradaran R, Cais O, Greger IH
Nature (2023) 621 pp. 877-882 [ Pubmed: 37704721 DOI: doi:10.1038/s41586-023-06528-0 ]
- (2r)-2,3-dihydroxypropyl (9z)-octadec-9-enoate (356 Da, Ligand)
- Water (18 Da, Ligand)
- Homomeric glua2 f231a mutant ampa receptor in complex with tarp gamma 2 (Complex from Rattus)
- {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2h)-yl]methyl}phosphonic acid (409 Da, Ligand)
- Voltage-dependent calcium channel gamma-2 subunit (35 kDa, Protein from Rattus norvegicus)
- Palmitic acid (256 Da, Ligand)
- Glutamate receptor 2 (99 kDa, Protein from Rattus norvegicus)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8c1s
Q-score: 0.556
Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Stockwell I, Baradaran R, Cais O, Greger IH
Nature (2023) 621 pp. 877-882 [ Pubmed: 37704721 DOI: doi:10.1038/s41586-023-06528-0 ]
- (2r)-2,3-dihydroxypropyl (9z)-octadec-9-enoate (356 Da, Ligand)
- Water (18 Da, Ligand)
- Glutamate receptor 2 (99 kDa, Protein from Rattus norvegicus)
- Voltage-dependent calcium channel gamma-2 subunit (35 kDa, Protein from Rattus norvegicus)
- Homomeric glua2 f231a mutant ampa receptor in complex with tarp gamma 2 (Complex from Rattus)
- Palmitic acid (256 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
Transmembrane domain of active state homomeric GluA1 AMPA receptor in tandem with TARP gamma 3
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 8c2h
Q-score: 0.619
Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Stockwell I, Baradaran R, Cais O, Greger IH
Nature (2023) 621 pp. 877-882 [ Pubmed: 37704721 DOI: doi:10.1038/s41586-023-06528-0 ]
- (2r)-2,3-dihydroxypropyl (9z)-octadec-9-enoate (356 Da, Ligand)
- Water (18 Da, Ligand)
- Homomeric glua1 ampa receptor in complex with tarp gamma 3 (Complex from Rattus)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Glutamate receptor 1 flip isoform (102 kDa, Protein from Rattus norvegicus)
- Palmitic acid (256 Da, Ligand)
- Voltage-dependent calcium channel gamma-3 subunit (35 kDa, Protein from Rattus norvegicus)