CryoEM structure of human XPR1 in complex with phosphate in state A
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9j51
Q-score: 0.468
Zhang W, Chen Y, Guan Z, Wang Y, Tang M, Du Z, Zhang J, Cheng M, Zuo J, Liu Y, Wang Q, Liu Y, Zhang D, Yin P, Ma L, Liu Z
Nat Commun (2025) 16 pp. 18-18 [ Pubmed: 39747008 DOI: doi:10.1038/s41467-024-55471-9 ]
- Solute carrier family 53 member 1 (84 kDa, Protein from Homo sapiens)
- Human xpr1 (Complex from Homo sapiens)
- Phosphate ion (94 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
CryoEM structure of human XPR1 in complex with phosphate in state B
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9j52
Q-score: 0.468
Zhang W, Chen Y, Guan Z, Wang Y, Tang M, Du Z, Zhang J, Cheng M, Zuo J, Liu Y, Wang Q, Liu Y, Zhang D, Yin P, Ma L, Liu Z
Nat Commun (2025) 16 pp. 18-18 [ Pubmed: 39747008 DOI: doi:10.1038/s41467-024-55471-9 ]
- Solute carrier family 53 member 1 (84 kDa, Protein from Homo sapiens)
- Phosphate ion (94 Da, Ligand)
- Human xpr1 (Complex from Homo sapiens)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
CryoEM structure of human XPR1 in complex with phosphate in state C
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9j53
Q-score: 0.413
Zhang W, Chen Y, Guan Z, Wang Y, Tang M, Du Z, Zhang J, Cheng M, Zuo J, Liu Y, Wang Q, Liu Y, Zhang D, Yin P, Ma L, Liu Z
Nat Commun (2025) 16 pp. 18-18 [ Pubmed: 39747008 DOI: doi:10.1038/s41467-024-55471-9 ]
- Solute carrier family 53 member 1 (84 kDa, Protein from Homo sapiens)
- Phosphate ion (94 Da, Ligand)
- Human xpr1 (Complex from Homo sapiens)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9jm0
Q-score: 0.492
Wang Y, Wang C, Guan Z, Cao J, Xu J, Wang S, Cui Y, Wang Q, Chen Y, Yin Y, Zhang D, Liu H, Sun M, Jin S, Tao P, Zou T
Cell Rep (2024) 43 pp. 114857-114857 [ DOI: doi:10.1016/j.celrep.2024.114857 Pubmed: 39395169 ]
- Retron ec86-effector fiber (Complex from Escherichia coli)
- [(2r,3s,4r,5r)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[[(2r,3s,4r,5s)-3,4,5-trihydroxyoxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate (559 Da, Ligand)
- Dna (85-mer) (26 kDa, DNA from Escherichia coli)
- Rna (82-mer) (26 kDa, RNA from Escherichia coli)
- Retron ec86 putative ribosyltransferase/dna-binding protein (35 kDa, Protein from Escherichia coli)
- Retron ec86 reverse transcriptase (37 kDa, Protein from Escherichia coli)
- Nicotinamide (122 Da, Ligand)
- Rna (5'-r(p*cp*gp*up*ap*ap*gp*gp*gp*up*gp*cp*gp*cp*a)-3') (4 kDa, RNA from Escherichia coli)
Portal protein of empty Haloferax tailed virus 1.
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 8qsi
Q-score: 0.532
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Magnesium ion (24 Da, Ligand)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
- Portal protein (75 kDa, Protein from Haloferax tailed virus 1)
- Hk97 gp6-like/spp1 gp15-like head-tail connector (15 kDa, Protein from Haloferax tailed virus 1)
Portal capsid interface of full Haloferax tailed virus 1.
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8qsy
Q-score: 0.571
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Hypothetical protein gp21 (9 kDa, Protein from Haloferax tailed virus 1)
- Magnesium ion (24 Da, Ligand)
- Hk97 gp5-like major capsid protein (43 kDa, Protein from Haloferax tailed virus 1)
- Potassium ion (39 Da, Ligand)
- Capsid stabilization protein (13 kDa, Protein from Haloferax tailed virus 1)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
- Portal protein (75 kDa, Protein from Haloferax tailed virus 1)
- Hk97 gp6-like/spp1 gp15-like head-tail connector (15 kDa, Protein from Haloferax tailed virus 1)
Portal protein of full Haloferax tailed virus 1.
Resolution: 2.342 Å
EM Method: Single-particle
Fitted PDBs: 8qqn
Q-score: 0.561
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Magnesium ion (24 Da, Ligand)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
- Portal protein (75 kDa, Protein from Haloferax tailed virus 1)
- Hk97 gp6-like/spp1 gp15-like head-tail connector (15 kDa, Protein from Haloferax tailed virus 1)
Turret of Haloferax tailed virus 1
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8qpg
Q-score: 0.588
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Prokaryotic polysaccharide deacetylase (45 kDa, Protein from Haloferax tailed virus 1)
- Gp30 (12 kDa, Protein from Haloferax tailed virus 1)
- Magnesium ion (24 Da, Ligand)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
- Zinc ion (65 Da, Ligand)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8qpq
Q-score: 0.538
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Prokaryotic polysaccharide deacetylase (45 kDa, Protein from Haloferax tailed virus 1)
- Gp30 (12 kDa, Protein from Haloferax tailed virus 1)
- Magnesium ion (24 Da, Ligand)
- Hk97 gp5-like major capsid protein (43 kDa, Protein from Haloferax tailed virus 1)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
- Zinc ion (65 Da, Ligand)
PGF2-alpha bound Prostaglandin F2-alpha receptor-Gq Protein Complex
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8xjl
Q-score: 0.559
Li X, Zhang X, Wen X, Zhang D, Qu C, Miao X, Zhang W, Zhang R, Liu G, Xiao P, Sun JP, Gong W
Cell Rep (2024) 43 pp. 113893-113893 [ Pubmed: 38446662 DOI: doi:10.1016/j.celrep.2024.113893 ]
- Pgf2-alpha-fp-minigq-scfv16 complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (40 kDa, Protein from Homo sapiens)
- Engineered minigq (28 kDa, Protein from synthetic construct)
- Antibody fragment scfv16 (27 kDa, Protein from synthetic construct)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- (z)-7-[(1r,2r,3r,5s)-3,5-bis(oxidanyl)-2-[(e,3s)-3-oxidanyloct-1-enyl]cyclopentyl]hept-5-enoic acid (354 Da, Ligand)
- Fusion tag,prostaglandin f2-alpha receptor,lgbit (64 kDa, Protein from synthetic construct)