Structure of Eastern Equine Encephalitis VLP in complex with the receptor VLDLR LA1-2
Cao D, Ma B, Cao Z, Xu X, Zhang X, Xiang Y
Nat Commun (2024) 15 pp. 6866-6866 [ Pubmed: 39127734 DOI: doi:10.1038/s41467-024-51293-x ]
- Calcium ion (40 Da, Ligand)
- Spike glycoprotein e1 (47 kDa, Protein from Eastern equine encephalitis virus)
- Spike glycoprotein e2 (47 kDa, Protein from Eastern equine encephalitis virus)
- Very low-density lipoprotein receptor (9 kDa, Protein from Homo sapiens)
- Capsid protein (29 kDa, Protein from Eastern equine encephalitis virus)
- East equine encephalitis virus vlp in complex with its receptor vldlr la1-2 at the asymmetric unit (Complex from Eastern equine encephalitis virus)
Structure of Eastern Equine Encephalitis VLP in complex with the receptor VLDLR LA3-5
Cao D, Ma B, Cao Z, Xu X, Zhang X, Xiang Y
Nat Commun (2024) 15 pp. 6866-6866 [ Pubmed: 39127734 DOI: doi:10.1038/s41467-024-51293-x ]
- East equine encephalitis virus vlp in complex with its receptor vldlr la3-5 at the asymmetric unit (Complex from Eastern equine encephalitis virus)
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Spike glycoprotein e1 (47 kDa, Protein from Eastern equine encephalitis virus)
- Spike glycoprotein e2 (47 kDa, Protein from Eastern equine encephalitis virus)
- Capsid protein (29 kDa, Protein from Eastern equine encephalitis virus)
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
Structure of Semliki Forest virus VLP in complex with the receptor VLDLR-LA3
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8ihp
Q-score: 0.556
Cao D, Ma B, Cao Z, Zhang X, Xiang Y
Cell (2023) 186 pp. 2208-2218.e15 [ DOI: doi:10.1016/j.cell.2023.03.032 Pubmed: 37098345 ]
- Calcium ion (40 Da, Ligand)
- Semliki forest virus vlp in complex with its receptor vldlr at the asymmetric unit (Complex from Semliki Forest virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein e2 (46 kDa, Protein from Semliki Forest virus)
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
- Capsid protein (17 kDa, Protein from Semliki Forest virus)
- Spike glycoprotein e1 (47 kDa, Protein from Semliki Forest virus)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ffe
Q-score: 0.425
Ma B, Huang C, Ma J, Xiang Y, Zhang X
Nature (2021) 598 pp. 677-681 [ DOI: doi:10.1038/s41586-021-03909-1 Pubmed: 34646021 ]
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Assembly protein e3 (6 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
Structure of Venezuelan equine encephalitis virus with the receptor LDLRAD3
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7fff
Q-score: 0.48
Ma B, Huang C, Ma J, Xiang Y, Zhang X
Nature (2021) 598 pp. 677-681 [ DOI: doi:10.1038/s41586-021-03909-1 Pubmed: 34646021 ]
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Low-density lipoprotein receptor class a domain-containing protein 3 (7 kDa, Protein from Homo sapiens)
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Assembly protein e3 (6 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Complex from Homo sapiens)
- Ldlrad3 (Complex)
- Venezuelan equine encephalitis virus (strain tc-83) (Complex from Venezuelan equine encephalitis virus (strain TC-83))
- Calcium ion (40 Da, Ligand)
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 2-fold axes
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7ffl
Q-score: 0.466
Ma B, Huang C, Ma J, Xiang Y, Zhang X
Nature (2021) 598 pp. 677-681 [ DOI: doi:10.1038/s41586-021-03909-1 Pubmed: 34646021 ]
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Low-density lipoprotein receptor class a domain-containing protein 3 (7 kDa, Protein from Homo sapiens)
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Assembly protein e3 (6 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Ldlrad3-d1 (Complex)
- Calcium ion (40 Da, Ligand)
- Venezuelan equine encephalitis virus (strain tc-83) (Complex from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Complex from Homo sapiens)
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 5-fold axes
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ffn
Q-score: 0.506
Ma B, Huang C, Ma J, Xiang Y, Zhang X
Nature (2021) 598 pp. 677-681 [ DOI: doi:10.1038/s41586-021-03909-1 Pubmed: 34646021 ]
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Ldlrad3 (Complex)
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Assembly protein e3 (6 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Calcium ion (40 Da, Ligand)
- Venezuelan equine encephalitis virus (strain tc-83) (Complex from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Complex from Homo sapiens)
- Low-density lipoprotein receptor class a domain-containing protein 3 (8 kDa, Protein from Homo sapiens)
Cryo-EM structure of VEEV VLP at the 5-fold axes
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ffo
Q-score: 0.45
Ma B, Huang C, Ma J, Xiang Y, Zhang X
Nature (2021) 598 pp. 677-681 [ DOI: doi:10.1038/s41586-021-03909-1 Pubmed: 34646021 ]
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Assembly protein e3 (6 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
Cryo-EM structure of VEEV VLP at the 2-fold axes
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ffq
Q-score: 0.382
Ma B, Huang C, Ma J, Xiang Y, Zhang X
Nature (2021) 598 pp. 677-681 [ DOI: doi:10.1038/s41586-021-03909-1 Pubmed: 34646021 ]
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Assembly protein e3 (6 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))