Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9j1w
Q-score: 0.543
PSII-Pcb Dimer of Acaryochloris Marina
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ymi
Q-score: 0.538
Shen L, Gao Y, Tang K, Qi R, Fu L, Chen JH, Wang W, Ma X, Li P, Chen M, Kuang T, Zhang X, Shen JR, Wang P, Han G
Sci Adv (2024) 10 pp. eadk7140-eadk7140 [ DOI: doi:10.1126/sciadv.adk7140 Pubmed: 38394197 ]
- Fe (ii) ion (55 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein m (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Unknown protein (3 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psii-pcb dimer of acaryochloris marina (Complex from Acaryochloris marina MBIC11017)
- Chlorophyll d (895 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii protein y (11 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein l (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii protein d1 2 (39 kDa, Protein from Acaryochloris marina MBIC11017)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- Photosystem ii cp43 reaction center protein (53 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center x protein (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii d2 protein 1 (39 kDa, Protein from Acaryochloris marina MBIC11017)
- Bicarbonate ion (61 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii protein psbi (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein t (5 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein ycf12 (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem ii 10 kda phosphoprotein psbh (7 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (37 kDa, Protein from Acaryochloris marina MBIC11017)
PSII-Pcb Tetramer of Acaryochloris Marina
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7ymm
Q-score: 0.415
Shen L, Gao Y, Tang K, Qi R, Fu L, Chen JH, Wang W, Ma X, Li P, Chen M, Kuang T, Zhang X, Shen JR, Wang P, Han G
Sci Adv (2024) 10 pp. eadk7140-eadk7140 [ Pubmed: 38394197 DOI: doi:10.1126/sciadv.adk7140 ]
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem ii reaction center protein ycf12 (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein k (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Bicarbonate ion (61 Da, Ligand)
- Photosystem ii protein y (11 kDa, Protein from Acaryochloris marina MBIC11017)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Acaryochloris marina MBIC11017)
- Chlorophyll d (895 Da, Ligand)
- Photosystem ii reaction center protein m (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Fe (ii) ion (55 Da, Ligand)
- Photosystem ii protein d1 2 (39 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii d2 protein 1 (39 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (37 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii cp43 reaction center protein (53 kDa, Protein from Acaryochloris marina MBIC11017)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii protein psbi (3 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Unknown protein (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Pheophytin a (871 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center x protein (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Psii-pcb tetramer of acaryochloris marina (Complex from Acaryochloris marina MBIC11017)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii 10 kda phosphoprotein psbh (7 kDa, Protein from Acaryochloris marina MBIC11017)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein z (6 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein t (5 kDa, Protein from Acaryochloris marina MBIC11017)
BAM-EspP complex structure with BamA-G431C and G781C/EspP-N1293C and A1043C mutations in nanodisc
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ye4
Q-score: 0.389
Shen C, Chang S, Luo Q, Chan KC, Zhang Z, Luo B, Xie T, Lu G, Zhu X, Wei X, Dong C, Zhou R, Zhang X, Tang X, Dong H
Nature (2023) 617 pp. 185-193 [ DOI: doi:10.1038/s41586-023-05988-8 Pubmed: 37100902 ]
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli K-12)
- Espp (Complex from Escherichia coli O157:H7)
- Serine protease espp (38 kDa, Protein from Escherichia coli O157:H7)
- Outer membrane protein assembly factor bamb (41 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bama (90 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli K-12)
- Bam-espp complex with bama-g431c and g781c/espp-n1293c and a1043c mutations in nanodisc (Complex)
- Bam (Complex from Escherichia coli K-12)
BAM-EspP complex structure with BamA-N427C/EspP-R1297C mutations in nanodisc
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ye6
Q-score: 0.275
Shen C, Chang S, Luo Q, Chan KC, Zhang Z, Luo B, Xie T, Lu G, Zhu X, Wei X, Dong C, Zhou R, Zhang X, Tang X, Dong H
Nature (2023) 617 pp. 185-193 [ DOI: doi:10.1038/s41586-023-05988-8 Pubmed: 37100902 ]
- Serine protease espp (38 kDa, Protein from Escherichia coli O157:H7)
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli K-12)
- Bam-espp complex structure with bama-n427c/espp-r1297c mutations in nanodisc (Complex)
- Espp (Complex from Escherichia coli O157:H7)
- Outer membrane protein assembly factor bama (90 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamb (41 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli K-12)
- Bam (Complex from Escherichia coli K-12)
The full-length map of avian influenza A polymerase.
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8h69
Q-score: 0.318
BAM-EspP complex structure with BamA-G431C/EspP-N1293C mutations in nanodisc
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8bnz
Q-score: 0.337
Shen C, Chang S, Luo Q, Chan KC, Zhang Z, Luo B, Xie T, Lu G, Zhu X, Wei X, Dong C, Zhou R, Zhang X, Tang X, Dong H
Nature (2023) 617 pp. 185-193 [ Pubmed: 37100902 DOI: doi:10.1038/s41586-023-05988-8 ]
- Bam (Complex from Escherichia coli K-12)
- Outer membrane protein assembly factor bama (90 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli K-12)
- Bam-espp complex with bama-g431c/espp-n1293c mutations in nanodisc (Complex)
- Outer membrane protein assembly factor bamb (41 kDa, Protein from Escherichia coli K-12)
- Serine protease espp (38 kDa, Protein from Escherichia coli O157:H7)
- Espp (Complex from Escherichia coli O157:H7)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli K-12)
BAM-EspP complex structure with BamA-S425C/EspP-S1299C mutations in nanodisc
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8bo2
Q-score: 0.333
Shen C, Chang S, Luo Q, Chan KC, Zhang Z, Luo B, Xie T, Lu G, Zhu X, Wei X, Dong C, Zhou R, Zhang X, Tang X, Dong H
Nature (2023) 617 pp. 185-193 [ Pubmed: 37100902 DOI: doi:10.1038/s41586-023-05988-8 ]
- Bam (Complex from Escherichia coli K-12)
- Bam-espp complex with bama-g431c/espp-n1293c mutations in nanodisc (Complex from Escherichia coli K-12)
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamb (41 kDa, Protein from Escherichia coli K-12)
- Serine protease espp (38 kDa, Protein from Escherichia coli K-12)
- Espp (Complex from Escherichia coli O157:H7)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bama (88 kDa, Protein from Escherichia coli K-12)
Barley photosystem I-LHCI-Lhca6 supercomplex
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7ewk
Q-score: 0.396
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ DOI: doi:10.1038/s41586-021-04277-6 Pubmed: 34879391 ]
- Chlorophyll a-b binding protein, chloroplastic (21 kDa, Protein from Hordeum vulgare)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Psi-lhci-lhca6 supercomplex of barley (Complex from Hordeum vulgare subsp. spontaneum)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit k (8 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit e (7 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca3 (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit h (6 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca6 (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit f (17 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit l (15 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i iron-sulfur center (8 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chlorophyll a-b binding protein lhca1 (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit d (15 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Phylloquinone (450 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)