Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7eko
Q-score: 0.511
Wang N, Wang Y, Zhao Q, Zhang X, Peng C, Zhang W, Liu Y, Vallon O, Schroda M, Cong Y, Liu C
Nat Plants (2021) 7 pp. 1505-1515 [ Pubmed: 34782772 DOI: doi:10.1038/s41477-021-01020-x ]
- Atp-dependent clp protease proteolytic subunit (43 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (23 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (28 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (28 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (25 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (33 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (28 kDa, Protein from Chlamydomonas reinhardtii)
- Complex of crclp protease (549 MDa, Complex from Chlamydomonas reinhardtii)
- Atp-dependent clp protease atp-binding subunit clpt4, chloroplastic (19 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (26 kDa, Protein from Chlamydomonas reinhardtii)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7ekq
Q-score: 0.304
Wang N, Wang Y, Zhao Q, Zhang X, Peng C, Zhang W, Liu Y, Vallon O, Schroda M, Cong Y, Liu C
Nat Plants (2021) 7 pp. 1505-1515 [ Pubmed: 34782772 DOI: doi:10.1038/s41477-021-01020-x ]
- Atp-dependent clp protease proteolytic subunit (43 kDa, Protein from Chlamydomonas reinhardtii)
- Complex of crclp protease and co-chaperonin cpn112023 (Complex from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (23 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (28 kDa, Protein from Chlamydomonas reinhardtii)
- Cpn20 co-chaperonin subunit (20 kDa, Protein from Chlamydomonas reinhardtii)
- Chaperonin 11 (10 kDa, Protein from Chlamydomonas reinhardtii)
- Chaperonin 23 (23 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (28 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (25 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (33 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (28 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease atp-binding subunit clpt4, chloroplastic (19 kDa, Protein from Chlamydomonas reinhardtii)
- Atp-dependent clp protease proteolytic subunit (26 kDa, Protein from Chlamydomonas reinhardtii)
Wang N, Wang Y, Zhao Q, Zhang X, Peng C, Zhang W, Liu Y, Vallon O, Schroda M, Cong Y, Liu C
Nat Plants (2021) 7 pp. 1505-1515 [ Pubmed: 34782772 DOI: doi:10.1038/s41477-021-01020-x ]
- Chaperonin 23 (23 kDa, Protein from Chlamydomonas smithii)
- Complex of crclp protease and co-chaperonin cpn112023 (Complex from Chlamydomonas reinhardtii)
- Chaperonin 11 (10 kDa, Protein from Chlamydomonas smithii)
- Cpn20 subunit (20 kDa, Protein from Chlamydomonas smithii)
EV-D68 in complex with 2H12 Fab (state S2)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7ebr
Q-score: 0.408
Zhang C, Xu C, Dai W, Wang Y, Liu Z, Zhang X, Wang X, Wang H, Gong S, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 2904-2904 [ DOI: doi:10.1038/s41467-021-23199-5 Pubmed: 34006855 ]
- Capsid protein vp2 (27 kDa, Protein from Human enterovirus D68)
- Capsid protein vp3 (27 kDa, Protein from Human enterovirus D68)
- Enterovirus d68 in complex with 2h12 fab (Complex)
- 2h12 fab heavy chain (22 kDa, Protein from Mus musculus)
- Enterovirus d68 (Virus from Enterovirus D68)
- 2h12 fab light chain (23 kDa, Protein from Mus musculus)
- Capsid protein vp4 (7 kDa, Protein from Human enterovirus D68)
- Capsid protein vp1 (32 kDa, Protein from Human enterovirus D68)
- 2h12 fab (Cellular component from Mus musculus)
EV-D68 in complex with 2H12 Fab (state S1)
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7ebz
Q-score: 0.519
Zhang C, Xu C, Dai W, Wang Y, Liu Z, Zhang X, Wang X, Wang H, Gong S, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 2904-2904 [ DOI: doi:10.1038/s41467-021-23199-5 Pubmed: 34006855 ]
- Capsid protein vp2 (27 kDa, Protein from Human enterovirus D68)
- Capsid protein vp3 (27 kDa, Protein from Human enterovirus D68)
- Enterovirus d68 in complex with 2h12 fab (Complex)
- Enterovirus d68 (Virus from Enterovirus D68)
- Fab 2h12 heavy chain (22 kDa, Protein from Mus musculus)
- Capsid protein vp4 (7 kDa, Protein from Human enterovirus D68)
- 2h12 fab (Complex from Mus musculus)
- Capsid protein vp1 (32 kDa, Protein from Human enterovirus D68)
- Fab 2h12 light chain (23 kDa, Protein from Mus musculus)
EV-D68 in complex with 8F12 Fab
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7ec5
Q-score: 0.548
Zhang C, Xu C, Dai W, Wang Y, Liu Z, Zhang X, Wang X, Wang H, Gong S, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 2904-2904 [ DOI: doi:10.1038/s41467-021-23199-5 Pubmed: 34006855 ]
- 8f12 fab heavy chain (23 kDa, Protein from Mus musculus)
- Capsid protein vp3 (27 kDa, Protein from Human enterovirus D68)
- 8f12 fab light chain (23 kDa, Protein from Mus musculus)
- Enterovirus d68 (Virus from Enterovirus D68)
- 8f12 fab (Complex from Mus musculus)
- Genome polyprotein (27 kDa, Protein from Human enterovirus D68)
- Capsid protein vp4 (7 kDa, Protein from Human enterovirus D68)
- Capsid protein vp1 (32 kDa, Protein from Human enterovirus D68)
- Enterovirus d68 in complex with 8f12 fab (Complex)
EV-D68 in complex with 2H12 Fab (State 3)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7ecy
Q-score: 0.36
Zhang C, Xu C, Dai W, Wang Y, Liu Z, Zhang X, Wang X, Wang H, Gong S, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 2904-2904 [ DOI: doi:10.1038/s41467-021-23199-5 Pubmed: 34006855 ]
- Capsid protein vp2 (27 kDa, Protein from Human enterovirus D68)
- Capsid protein vp3 (27 kDa, Protein from Human enterovirus D68)
- Enterovirus d68 in complex with 2h12 fab (Complex)
- Fab 2h12 heavy chain (22 kDa, Protein from Mus musculus)
- Enterovirus d68 (Complex from Enterovirus D68)
- 2h12 fab (Complex from Mus musculus)
- Capsid protein vp1 (32 kDa, Protein from Human enterovirus D68)
- Fab 2h12 light chain (23 kDa, Protein from Mus musculus)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7dcc
Q-score: 0.137
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- The heavy chain of 3c1 fab (24 kDa, Protein from Mus musculus)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 3c1 fab with a heavy chain and a light chain (Complex from Severe acute respiratory syndrome coronavirus 2)
- The light chain of 3c1 fab (23 kDa, Protein from Mus musculus)
- Sarc-cov2-s protein (Complex)
- Complex of sarc-cov2-s protein with 3c1 fab, all the three rbds are in the up conformation and each of them associates with a 3c1 fab (Complex from Mus musculus)
S-3C1-F3a structure, two RBDs are up and one RBD is down, each RBD binds with a 3C1 fab.
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 7dcx
Q-score: 0.087
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 3c1 fab with a heavy chain and a light chain (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov2-s protein (Complex)
- Complex of sars-cov2-s protein with 3c1 fab, two rbds are up and one rbd is down (Complex from Mus musculus)
- The heavy chain of 3c1 fab that binds with the up rbd (24 kDa, Protein from Mus musculus)
- The light chain of 3c1 fab (23 kDa, Protein from Mus musculus)