EV-D68 in complex with 2H12 Fab (state S2)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7ebr
Q-score: 0.408
Zhang C, Xu C, Dai W, Wang Y, Liu Z, Zhang X, Wang X, Wang H, Gong S, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 2904-2904 [ DOI: doi:10.1038/s41467-021-23199-5 Pubmed: 34006855 ]
- Capsid protein vp2 (27 kDa, Protein from Human enterovirus D68)
- Capsid protein vp3 (27 kDa, Protein from Human enterovirus D68)
- Enterovirus d68 in complex with 2h12 fab (Complex)
- 2h12 fab heavy chain (22 kDa, Protein from Mus musculus)
- Enterovirus d68 (Virus from Enterovirus D68)
- 2h12 fab light chain (23 kDa, Protein from Mus musculus)
- Capsid protein vp4 (7 kDa, Protein from Human enterovirus D68)
- Capsid protein vp1 (32 kDa, Protein from Human enterovirus D68)
- 2h12 fab (Cellular component from Mus musculus)
EV-D68 in complex with 2H12 Fab (state S1)
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7ebz
Q-score: 0.519
Zhang C, Xu C, Dai W, Wang Y, Liu Z, Zhang X, Wang X, Wang H, Gong S, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 2904-2904 [ DOI: doi:10.1038/s41467-021-23199-5 Pubmed: 34006855 ]
- Capsid protein vp2 (27 kDa, Protein from Human enterovirus D68)
- Capsid protein vp3 (27 kDa, Protein from Human enterovirus D68)
- Enterovirus d68 in complex with 2h12 fab (Complex)
- Enterovirus d68 (Virus from Enterovirus D68)
- Fab 2h12 heavy chain (22 kDa, Protein from Mus musculus)
- Capsid protein vp4 (7 kDa, Protein from Human enterovirus D68)
- 2h12 fab (Complex from Mus musculus)
- Capsid protein vp1 (32 kDa, Protein from Human enterovirus D68)
- Fab 2h12 light chain (23 kDa, Protein from Mus musculus)
EV-D68 in complex with 8F12 Fab
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7ec5
Q-score: 0.548
Zhang C, Xu C, Dai W, Wang Y, Liu Z, Zhang X, Wang X, Wang H, Gong S, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 2904-2904 [ DOI: doi:10.1038/s41467-021-23199-5 Pubmed: 34006855 ]
- 8f12 fab heavy chain (23 kDa, Protein from Mus musculus)
- Capsid protein vp3 (27 kDa, Protein from Human enterovirus D68)
- 8f12 fab light chain (23 kDa, Protein from Mus musculus)
- Enterovirus d68 (Virus from Enterovirus D68)
- 8f12 fab (Complex from Mus musculus)
- Genome polyprotein (27 kDa, Protein from Human enterovirus D68)
- Capsid protein vp4 (7 kDa, Protein from Human enterovirus D68)
- Capsid protein vp1 (32 kDa, Protein from Human enterovirus D68)
- Enterovirus d68 in complex with 8f12 fab (Complex)
EV-D68 in complex with 2H12 Fab (State 3)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7ecy
Q-score: 0.36
Zhang C, Xu C, Dai W, Wang Y, Liu Z, Zhang X, Wang X, Wang H, Gong S, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 2904-2904 [ DOI: doi:10.1038/s41467-021-23199-5 Pubmed: 34006855 ]
- Fab 2h12 light chain (23 kDa, Protein from Mus musculus)
- Enterovirus d68 in complex with 2h12 fab (Complex)
- Fab 2h12 heavy chain (22 kDa, Protein from Mus musculus)
- Capsid protein vp2 (27 kDa, Protein from Human enterovirus D68)
- Capsid protein vp1 (32 kDa, Protein from Human enterovirus D68)
- Enterovirus d68 (Complex from Enterovirus D68)
- Capsid protein vp3 (27 kDa, Protein from Human enterovirus D68)
- 2h12 fab (Complex from Mus musculus)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7dcc
Q-score: 0.137
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- The heavy chain of 3c1 fab (24 kDa, Protein from Mus musculus)
- Complex of sarc-cov2-s protein with 3c1 fab, all the three rbds are in the up conformation and each of them associates with a 3c1 fab (Complex from Mus musculus)
- The light chain of 3c1 fab (23 kDa, Protein from Mus musculus)
- 3c1 fab with a heavy chain and a light chain (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sarc-cov2-s protein (Complex)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
S-3C1-F3a structure, two RBDs are up and one RBD is down, each RBD binds with a 3C1 fab.
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 7dcx
Q-score: 0.087
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- The light chain of 3c1 fab (23 kDa, Protein from Mus musculus)
- 3c1 fab with a heavy chain and a light chain (Complex from Severe acute respiratory syndrome coronavirus 2)
- The heavy chain of 3c1 fab that binds with the up rbd (24 kDa, Protein from Mus musculus)
- Sars-cov2-s protein (Complex)
- Complex of sars-cov2-s protein with 3c1 fab, two rbds are up and one rbd is down (Complex from Mus musculus)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
S-3C1-F2 structure, two RBDs are up and one RBD is down, the two up RBD bind with a 3C1 fab.
Resolution: 5.6 Å
EM Method: Single-particle
Fitted PDBs: 7dd2
Q-score: 0.1
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- The heavy chain of 3c1 fab (24 kDa, Protein from Mus musculus)
- 3c1 fab with a heavy chain and a light chain (Complex)
- The light chain of 3c1 fab (23 kDa, Protein from Mus musculus)
- Complex of sars-cov2-s protein with 3c1 fab, two rbds are up and one rbd is down, only the two up rbds bind with a 3c1 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov2-s protein (Complex from Mus musculus)
S-3C1-F1 structure, one RBD is up and two RBDs are down, the up RBD binds with a 3C1 fab
Resolution: 7.5 Å
EM Method: Single-particle
Fitted PDBs: 7dd8
Q-score: 0.081
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- The heavy chain of 3c1 fab (24 kDa, Protein from Mus musculus)
- The light chain of 3c1 chain (23 kDa, Protein from Mus musculus)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 3c1 fab with a heavy chain and a light chain (Complex from Severe acute respiratory syndrome coronavirus 2)
- Complex of sars-cov2-s protein with 3c1 fab, one rbd is up and two rbds are down, the up rbd binds with a 3c1 fab (Complex from Mus musculus)
- Sars-cov2-s protein (Complex)
S-2H2-F3a structure, two RBDs are up and one RBD is down, each RBD binds with a 2H2 Fab.
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7dk4
Q-score: 0.244
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- 2h2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 s protein (Complex)
- Complex of sars-cov-2 s protein with 2h2 fab, two rbds are up and one rbd is down (Complex from Mus musculus)
- The heavy chain of 2h2 fab (22 kDa, Protein from Mus musculus)
- The light chain of 2h2 fab (23 kDa, Protein from Mus musculus)
S-2H2-F1 structure, one RBD is up and two RBDs are down, only up RBD binds with a 2H2 Fab
Resolution: 13.5 Å
EM Method: Single-particle
Fitted PDBs: 7dk5
Q-score: 0.071
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- Complex of sars-cov-2 s protein with 2h2 fab, one rbd is up and two rbds are down (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The heavy chain of 2h2 fab (22 kDa, Protein from Mus musculus)
- The light chain of 2h2 fab (23 kDa, Protein from Mus musculus)
- Sars-cov-2 s protein (Complex from Mus musculus)
- 2h2 fab (Complex)