PSI-FCPI-L in Thalassiosira pseudonana
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8zeh
Q-score: 0.566
Feng Y, Li Z, Yang Y, Shen L, Li X, Liu X, Zhang X, Zhang J, Ren F, Wang Y, Liu C, Han G, Wang X, Kuang T, Shen JR, Wang W
J Integr Plant Biol (2024) [ DOI: doi:10.1111/jipb.13816 Pubmed: 39670505 ]
- Tp-lhcr20 (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit ii (14 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chlorophyll a/c light-harvesting protein (19 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chlorophyll a/c light-harvesting protein (23 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit xi (15 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Fucoxanthin chl a/c light-harvesting protein (19 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein, major type (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chlorophyll a/c light-harvesting protein, lhcr type (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit psa29 (13 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Tp-lhcr18 (16 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Fucoxanthin chlorophyll a/c-binding protein lhcq8 (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Pt17531-like protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Chlorophyll c1 (610 Da, Ligand)
- Fucoxanthin chl a/c light-harvesting protein, lhcr type (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Chlorophyll a (893 Da, Ligand)
- Tp-redcap (20 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit iii (17 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Tp-psar (9 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Beta-carotene (536 Da, Ligand)
- Tp-psi-fcpi-l (Complex from Thalassiosira pseudonana CCMP1335)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
Tp-PSI-FCPI-S in Thalassiosira pseudonana
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8zet
Q-score: 0.485
Feng Y, Li Z, Yang Y, Shen L, Li X, Liu X, Zhang X, Zhang J, Ren F, Wang Y, Liu C, Han G, Wang X, Kuang T, Shen JR, Wang W
J Integr Plant Biol (2024) [ DOI: doi:10.1111/jipb.13816 Pubmed: 39670505 ]
- Photosystem i reaction center subunit ii (14 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Tp-psi-fcpi-s (Complex from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit xi (15 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Fucoxanthin chl a/c light-harvesting protein, major type (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit psa29 (13 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Fucoxanthin chlorophyll a/c-binding protein lhcq8 (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Pt17531-like protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Chlorophyll c1 (610 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Chlorophyll a (893 Da, Ligand)
- Tp-redcap (20 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit iii (17 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Tp-psar (9 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Beta-carotene (536 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
Acyl-ACP Synthetase structure bound to C10-AMS
Resolution: 2.33 Å
EM Method: Single-particle
Fitted PDBs: 8jyl
Q-score: 0.677
Huang H, Chang S, Cui T, Huang M, Qu J, Zhang H, Lu T, Zhang X, Zhou C, Feng Y
PLoS Pathog (2024) 20 pp. e1012376-e1012376 [ DOI: doi:10.1371/journal.ppat.1012376 Pubmed: 39008531 ]
- Magnesium ion (24 Da, Ligand)
- Acyl-acp synthetase bound to c10-ams (Complex from Vibrio harveyi)
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- [(2r,3s,4r,5r)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl n-decanoylsulfamate (500 Da, Ligand)
Acyl-ACP Synthetase structure bound to Decanoyl-AMP
Resolution: 2.19 Å
EM Method: Single-particle
Fitted PDBs: 8jyu
Q-score: 0.61
Huang H, Chang S, Cui T, Huang M, Qu J, Zhang H, Lu T, Zhang X, Zhou C, Feng Y
PLoS Pathog (2024) 20 pp. e1012376-e1012376 [ DOI: doi:10.1371/journal.ppat.1012376 Pubmed: 39008531 ]
- Acyl-acp synthetase structure bound to decanoyl-amp (Complex from Vibrio harveyi)
- Decanoic acid (172 Da, Ligand)
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- Adenosine monophosphate (347 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
Acyl-ACP synthetase structure bound to MC7-ACP
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 8i8d
Q-score: 0.555
Huang H, Wang C, Chang S, Cui T, Xu Y, Huang M, Zhang H, Zhou C, Zhang X, Feng Y
Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-024-01464-7 Pubmed: 39794554 ]
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- Adenosine monophosphate (347 Da, Ligand)
- Acyl-acp synthetase bound to mc7-acp (Complex from Vibrio harveyi)
- 7-methoxy-7-oxidanylidene-heptanoic acid (174 Da, Ligand)
- N~3~-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-n-(2-sulfanylethyl)-beta-alaninamide (358 Da, Ligand)
- Acyl carrier protein (8 kDa, Protein from Escherichia coli)
Acyl-ACP synthetase structure bound to C18:1-ACP
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 8i8e
Q-score: 0.524
Huang H, Wang C, Chang S, Cui T, Xu Y, Huang M, Zhang H, Zhou C, Zhang X, Feng Y
Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-024-01464-7 Pubmed: 39794554 ]
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- Adenosine monophosphate (347 Da, Ligand)
- Acyl-acp synthetase bound to c18:1-acp (Complex from Vibrio harveyi)
- Acyl carrier protein (8 kDa, Protein from Escherichia coli)
- Oleic acid (282 Da, Ligand)
Acyl-ACP synthetase structure bound to AMP-C18:1
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 8i6m
Q-score: 0.57
Huang H, Wang C, Chang S, Cui T, Xu Y, Huang M, Zhang H, Zhou C, Zhang X, Feng Y
Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-024-01464-7 Pubmed: 39794554 ]
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- Magnesium ion (24 Da, Ligand)
- Adenosine monophosphate (347 Da, Ligand)
- Acyl-acp synthetase bound to amp-c18:1 (Complex from Vibrio harveyi)
- Oleic acid (282 Da, Ligand)
Acyl-ACP synthetase structure-2
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8hzx
Q-score: 0.55
Huang H, Wang C, Chang S, Cui T, Xu Y, Zhang H, Zhou C, Zhang X, Feng Y
Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-024-01464-7 ]
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- Acyl-acp synthetase (Complex from Vibrio harveyi)
Acyl-ACP synthetase structure bound to oleic acid
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 8i35
Q-score: 0.567
Huang H, Wang C, Chang S, Cui T, Xu Y, Huang M, Zhang H, Zhou C, Zhang X, Feng Y
Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-024-01464-7 Pubmed: 39794554 ]
- Acyl-acp synthetase bound to oleic acid (Complex from Vibrio harveyi)
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- Oleic acid (282 Da, Ligand)
Acyl-ACP synthetase structure bound to AMP-PNP in the presence of MgCl2
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8i3i
Q-score: 0.6
Huang H, Wang C, Chang S, Cui T, Xu Y, Huang M, Zhang H, Zhou C, Zhang X, Feng Y
Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-024-01464-7 Pubmed: 39794554 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- Magnesium ion (24 Da, Ligand)
- Acyl-acp synthetase bound to amp-pnp (Complex from Vibrio harveyi)