Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7x6u
Q-score: 0.313
Sun Z, Cheng J, Bai Y, Cao L, Xie D, Deng F, Zhang X, Rao Z, Lou Z
Protein Cell (2023) 14 pp. 914-918 [ DOI: doi:10.1093/procel/pwad019 Pubmed: 37038326 ]
- Envelopment polyprotein (61 kDa, Protein from Severe fever with thrombocytopenia syndrome virus)
- Severe fever with thrombocytopenia syndrome virus (Virus from severe fever with thrombocytopenia syndrome virus)
- Envelopment polyprotein (54 kDa, Protein from Severe fever with thrombocytopenia syndrome virus)
Resolution: 7.2 Å
EM Method: Single-particle
Fitted PDBs: 7x72
Q-score: 0.11
Sun Z, Cheng J, Bai Y, Cao L, Xie D, Deng F, Zhang X, Rao Z, Lou Z
Protein Cell (2023) 14 pp. 914-918 [ DOI: doi:10.1093/procel/pwad019 Pubmed: 37038326 ]
- Envelopment polyprotein (61 kDa, Protein from Severe fever with thrombocytopenia syndrome virus)
- Envelopment polyprotein (54 kDa, Protein from Severe fever with thrombocytopenia syndrome virus)
- Severe fever with thrombocytopenia syndrome virus (Virus from Severe fever with thrombocytopenia syndrome virus)
Resolution: 3.85 Å
EM Method: Single-particle
Fitted PDBs: 7v26
Q-score: 0.328
Liu Z, Xu W, Chen Z, Fu W, Zhan W, Gao Y, Zhou J, Zhou Y, Wu J, Wang Q, Zhang X, Hao A, Wu W, Zhang Q, Li Y, Fan K, Chen R, Jiang Q, Mayer CT, Schoofs T, Xie Y, Jiang S, Wen Y, Yuan Z, Wang K, Lu L, Sun L, Wang Q
Protein Cell (2022) 13 pp. 655-675 [ DOI: doi:10.1007/s13238-021-00871-6 Pubmed: 34554412 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 s (Complex from Homo sapiens)
- Xg005-bound sars-cov-2 s (Complex from Severe acute respiratory syndrome coronavirus 2)
- Xg005 light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Xg005 heavy chain (24 kDa, Protein from Homo sapiens)
- Xg005 (Complex)
SARS-CoV-2 Spike trimer in complex with XG014 Fab
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7v2a
Q-score: 0.482
Liu Z, Xu W, Chen Z, Fu W, Zhan W, Gao Y, Zhou J, Zhou Y, Wu J, Wang Q, Zhang X, Hao A, Wu W, Zhang Q, Li Y, Fan K, Chen R, Jiang Q, Mayer CT, Schoofs T, Xie Y, Jiang S, Wen Y, Yuan Z, Wang K, Lu L, Sun L, Wang Q
Protein Cell (2022) 13 pp. 655-675 [ DOI: doi:10.1007/s13238-021-00871-6 Pubmed: 34554412 ]
- The heavy chain of xg014 (25 kDa, Protein from Homo sapiens)
- The light chain of xg014 fab (22 kDa, Protein from Homo sapiens)
- Xg014 (Complex)
- S trimer of sars-cov-2 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Xg014 in complex with s trimer of sars-cov-2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Structure of HSV2 viron capsid portal vertex
Resolution: 5.39 Å
EM Method: Single-particle
Fitted PDBs: 6m6g
Q-score: 0.188
Wang N, Chen W, Zhu L, Zhu D, Feng R, Wang J, Zhu B, Zhang X, Chen X, Liu X, Yan R, Ni D, Zhou GG, Liu H, Rao Z, Wang X
Protein Cell (2020) 11 pp. 366-373 [ DOI: doi:10.1007/s13238-020-00711-z Pubmed: 32285350 ]
- Capsid vertex component 1 (74 kDa, Protein from Human herpesvirus 2)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 2)
- Large tegument protein deneddylase (330 kDa, Protein from Human herpesvirus 2)
- Human herpesvirus 2 (Virus from Human herpesvirus 2)
- Major capsid protein (149 kDa, Protein from Human herpesvirus 2)
- Triplex capsid protein 1 (50 kDa, Protein from Human herpesvirus 2)
- Small capsomere-interacting protein (12 kDa, Protein from Human herpesvirus 2)
- Capsid vertex component 2 (63 kDa, Protein from Human herpesvirus 2)
- Coiled coils (7 kDa, Protein from Human herpesvirus 2)
- Coiled coils (7 kDa, Protein from Human herpesvirus 2)
Structure of HSV2 C-capsid portal vertex
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6m6h
Q-score: 0.202
Wang N, Chen W, Zhu L, Zhu D, Feng R, Wang J, Zhu B, Zhang X, Chen X, Liu X, Yan R, Ni D, Zhou GG, Liu H, Rao Z, Wang X
Protein Cell (2020) 11 pp. 366-373 [ DOI: doi:10.1007/s13238-020-00711-z Pubmed: 32285350 ]
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 2)
- Triplex capsid protein 1 (50 kDa, Protein from Human herpesvirus 2)
- Human alphaherpesvirus 2 (Virus from Human alphaherpesvirus 2)
- Small capsomere-interacting protein (12 kDa, Protein from Human herpesvirus 2)
- Capsid vertex component 1 (74 kDa, Protein from Human herpesvirus 2)
- Large tegument protein deneddylase (330 kDa, Protein from Human herpesvirus 2)
- Major capsid protein (149 kDa, Protein from Human herpesvirus 2)
- Capsid vertex component 2 (63 kDa, Protein from Human herpesvirus 2)
Structure of HSV2 B-capsid portal vertex
Resolution: 4.05 Å
EM Method: Single-particle
Fitted PDBs: 6m6i
Q-score: 0.257
Wang N, Chen W, Zhu L, Zhu D, Feng R, Wang J, Zhu B, Zhang X, Chen X, Liu X, Yan R, Ni D, Zhou GG, Liu H, Rao Z, Wang X
Protein Cell (2020) 11 pp. 366-373 [ DOI: doi:10.1007/s13238-020-00711-z Pubmed: 32285350 ]
- Coiled coils chain 2 (7 kDa, Protein from Human herpesvirus 2)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 2)
- Human alphaherpesvirus 2 (Virus from Human alphaherpesvirus 2)
- Small capsomere-interacting protein (12 kDa, Protein from Human herpesvirus 2)
- Triplex capsid protein 1 (50 kDa, Protein from Human herpesvirus 2)
- Major capsid protein (149 kDa, Protein from Human herpesvirus 2)
- Coiled coils chain 1 (6 kDa, Protein from Human herpesvirus 2)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7bwr
Q-score: 0.419
Zhang L, Zhao Y, Gao R, Li J, Yang X, Gao Y, Zhao W, Gurcha SS, Veerapen N, Batt SM, Besra KK, Xu W, Bi L, Zhang X, Guddat LW, Yang H, Wang Q, Besra GS, Rao Z
Protein Cell (2020) 11 pp. 505-517 [ Pubmed: 32363534 DOI: doi:10.1007/s13238-020-00726-6 ]
- Integral membrane indolylacetylinositol arabinosyltransferase embb (116 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Mycobacterial arabinosyltransferase complex embb2-acpm2 (254 MDa, Complex from Mycolicibacterium smegmatis MC2 155)
- Calcium ion (40 Da, Ligand)
- Meromycolate extension acyl carrier protein (10 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- [(2z,6e,10e,14z,18e,22z,26z)-3,7,11,15,19,23,27,31,35,39-decamethyltetraconta-2,6,10,14,18,22,26,30,34,38-decaenyl] [(2s,3s,4s,5r)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl] hydrogen phosphate (911 Da, Ligand)
Mycobacterium smegmatis arabinosyltransferase complex EmbB2-AcpM2 in symmetric "resting state
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7bx8
Q-score: 0.443
Zhang L, Zhao Y, Gao R, Li J, Yang X, Gao Y, Zhao W, Gurcha SS, Veerapen N, Batt SM, Besra KK, Xu W, Bi L, Zhang X, Guddat LW, Yang H, Wang Q, Besra GS, Rao Z
Protein Cell (2020) 11 pp. 505-517 [ DOI: doi:10.1007/s13238-020-00726-6 Pubmed: 32363534 ]
- Mycobacterial arabinosyltransferase complex embb2-acpm2 (254 MDa, Complex from Mycolicibacterium smegmatis MC2 155)
- Integral membrane indolylacetylinositol arabinosyltransferase embb (116 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Meromycolate extension acyl carrier protein (10 kDa, Protein from Mycolicibacterium smegmatis MC2 155)