Acyl-ACP synthetase structure bound to MC7-ACP
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 8i8d
Q-score: 0.555
Huang H, Wang C, Chang S, Cui T, Xu Y, Huang M, Zhang H, Zhou C, Zhang X, Feng Y
Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-024-01464-7 Pubmed: 39794554 ]
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- Adenosine monophosphate (347 Da, Ligand)
- Acyl-acp synthetase bound to mc7-acp (Complex from Vibrio harveyi)
- 7-methoxy-7-oxidanylidene-heptanoic acid (174 Da, Ligand)
- N~3~-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-n-(2-sulfanylethyl)-beta-alaninamide (358 Da, Ligand)
- Acyl carrier protein (8 kDa, Protein from Escherichia coli)
Acyl-ACP synthetase structure bound to C18:1-ACP
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 8i8e
Q-score: 0.524
Huang H, Wang C, Chang S, Cui T, Xu Y, Huang M, Zhang H, Zhou C, Zhang X, Feng Y
Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-024-01464-7 Pubmed: 39794554 ]
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- Adenosine monophosphate (347 Da, Ligand)
- Acyl-acp synthetase bound to c18:1-acp (Complex from Vibrio harveyi)
- Acyl carrier protein (8 kDa, Protein from Escherichia coli)
- Oleic acid (282 Da, Ligand)
LolCD(E171Q)E with bound AMPPNP in nanodiscs
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7v8i
Q-score: 0.345
Bei W, Luo Q, Shi H, Zhou H, Zhou M, Zhang X, Huang Y
PLoS Biol (2022) 20 pp. e3001823-e3001823 [ Pubmed: 36228045 DOI: doi:10.1371/journal.pbio.3001823 ]
- Lipoprotein-releasing system atp-binding protein lold (25 kDa, Protein from Escherichia coli K-12)
- Lolcd(e171q)e with bound amppnp in nanodiscs (Complex from Escherichia coli)
- Lipoprotein-releasing system transmembrane protein lole (45 kDa, Protein from Escherichia coli K-12)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Lipoprotein-releasing system transmembrane protein lolc (43 kDa, Protein from Escherichia coli K-12)
Structures of class I bacterial transcription complexes
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7beg
Q-score: 0.221
Hao M, Ye F, Jovanovic M, Kotta-Loizou I, Xu Q, Qin X, Buck M, Zhang X, Wang M
Adv Sci (2022) 9 pp. e2103669-e2103669 [ Pubmed: 34761556 DOI: doi:10.1002/advs.202103669 ]
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Class i transcription complex (600 kDa, Complex)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase (Complex from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Rna polymerase sigma factor rpod (72 kDa, Protein from Escherichia coli)
- Transcriptional activator rama (15 kDa, Protein from Klebsiella pneumoniae)
- Class i pacra promoter template dna (28 kDa, DNA from Klebsiella pneumoniae)
- Class i pacra promoter non-template dna (29 kDa, DNA from Klebsiella pneumoniae)
- Class i transcription complex (Complex from Klebsiella pneumoniae)
EcoR124I-Ocr in the Intermediate State
Resolution: 4.37 Å
EM Method: Single-particle
Fitted PDBs: 7bst
Q-score: 0.245
Gao Y, Cao D, Zhu J, Feng H, Luo X, Liu S, Yan XX, Zhang X, Gao P
Nat Microbiol (2020) 5 pp. 1107-1118 [ Pubmed: 32483229 DOI: doi:10.1038/s41564-020-0731-z ]
- Type i restriction enzyme r protein (120 kDa, Protein from Escherichia coli)
- Overcome classical restriction gp0.3 (13 kDa, Protein from Escherichia phage T7)
- Type-1 restriction enzyme ecor124ii specificity protein (46 kDa, Protein from Escherichia coli)
- Ecor124i-ocr (Complex from Escherichia coli)
- Type i restriction enzyme ecor124ii m protein (58 kDa, Protein from Escherichia coli)
EcoR124I-ArdA in the Translocation State
Resolution: 3.97 Å
EM Method: Single-particle
Fitted PDBs: 7bto
Q-score: 0.326
Gao Y, Cao D, Zhu J, Feng H, Luo X, Liu S, Yan XX, Zhang X, Gao P
Nat Microbiol (2020) 5 pp. 1107-1118 [ DOI: doi:10.1038/s41564-020-0731-z Pubmed: 32483229 ]
- Type i restriction enzyme ecor124ii m protein (58 kDa, Protein from Escherichia coli)
- Type i restriction enzyme r protein (120 kDa, Protein from Escherichia coli)
- Ecor124i-arda (Complex from Escherichia coli)
- Antirestriction protein arda (19 kDa, Protein from Enterococcus faecalis EnGen0302)
- Type-1 restriction enzyme ecor124ii specificity protein (46 kDa, Protein from Escherichia coli)
EcoR124I-Ocr in Restriction-Alleviation State
Resolution: 4.01 Å
EM Method: Single-particle
Fitted PDBs: 7btp
Q-score: 0.249
Gao Y, Cao D, Zhu J, Feng H, Luo X, Liu S, Yan XX, Zhang X, Gao P
Nat Microbiol (2020) 5 pp. 1107-1118 [ Pubmed: 32483229 DOI: doi:10.1038/s41564-020-0731-z ]
- Type i restriction enzyme r protein (120 kDa, Protein from Escherichia coli)
- Overcome classical restriction gp0.3 (13 kDa, Protein from Escherichia phage T7)
- Type-1 restriction enzyme ecor124ii specificity protein (46 kDa, Protein from Escherichia coli)
- Ecor124i-ocr (Complex from Escherichia coli)
- Type i restriction enzyme ecor124ii m protein (58 kDa, Protein from Escherichia coli)
EcoR124I-DNA in the Restriction-Alleviation State
Resolution: 4.54 Å
EM Method: Single-particle
Fitted PDBs: 7btq
Q-score: 0.277
Gao Y, Cao D, Zhu J, Feng H, Luo X, Liu S, Yan XX, Zhang X, Gao P
Nat Microbiol (2020) 5 pp. 1107-1118 [ Pubmed: 32483229 DOI: doi:10.1038/s41564-020-0731-z ]
- Dna (64-mer) (19 kDa, DNA from Escherichia coli)
- Type i restriction enzyme r protein (120 kDa, Protein from Escherichia coli)
- Ecor124i-dna (Complex from Escherichia coli)
- Type-1 restriction enzyme ecor124ii specificity protein (46 kDa, Protein from Escherichia coli)
- Dna (64-mer) (19 kDa, DNA from Escherichia coli)
- Type i restriction enzyme ecor124ii m protein (58 kDa, Protein from Escherichia coli)
EcoR124I-ArdA in the Restriction-Alleviation State
Resolution: 4.54 Å
EM Method: Single-particle
Fitted PDBs: 7btr
Q-score: 0.229
Gao Y, Cao D, Zhu J, Feng H, Luo X, Liu S, Yan XX, Zhang X, Gao P
Nat Microbiol (2020) 5 pp. 1107-1118 [ Pubmed: 32483229 DOI: doi:10.1038/s41564-020-0731-z ]
- Type i restriction enzyme r protein (120 kDa, Protein from Escherichia coli)
- Ecor124i-arda (Complex from Escherichia coli)
- Antirestriction protein arda (19 kDa, Protein from Enterococcus faecalis EnGen0302)
- Type-1 restriction enzyme ecor124ii specificity protein (46 kDa, Protein from Escherichia coli)
- Type i restriction enzyme ecor124ii m protein (58 kDa, Protein from Escherichia coli)