Spo11 core complex with gapped DNA
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8urq
Q-score: 0.442
Yu Y, Wang J, Liu K, Zheng Z, Arter M, Claeys Bouuaert C, Pu S, Patel DJ, Keeney S
Nat Struct Mol Biol (2025) 32 pp. 113-124 [ DOI: doi:10.1038/s41594-024-01382-8 Pubmed: 39304764 ]
- Meiosis-specific protein spo11 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Meiotic recombination protein rec102 (30 kDa, Protein from Saccharomyces cerevisiae S288C)
- Meiotic recombination protein rec104 (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- Gapped dna (21 kDa, DNA from Saccharomyces cerevisiae S288C)
- Spo11 core complex bound to gapped dna (140 kDa, Complex from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Antiviral protein ski8 (44 kDa, Protein from Saccharomyces cerevisiae S288C)
Spo11 core complex with hairpin DNA
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8uru
Q-score: 0.419
Yu Y, Wang J, Liu K, Zheng Z, Arter M, Claeys Bouuaert C, Pu S, Patel DJ, Keeney S
Nat Struct Mol Biol (2025) 32 pp. 113-124 [ DOI: doi:10.1038/s41594-024-01382-8 Pubmed: 39304764 ]
- Meiosis-specific protein spo11 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Hairpin dna (14 kDa, DNA from Saccharomyces cerevisiae S288C)
- Antiviral protein ski8 (44 kDa, Protein from Saccharomyces cerevisiae S288C)
- Spo11 core complex bound to gapped dna (140 kDa, Complex from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Meiotic recombination protein rec104 (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- Meiotic recombination protein rec102 (30 kDa, Protein from Saccharomyces cerevisiae S288C)
Cryo-EM structure of cyanobacterial phycobilisome from Synechococcus sp. PCC 7002
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ext
Q-score: 0.11
Zheng L, Zheng Z, Li X, Wang G, Zhang K, Wei P, Zhao J, Gao N
Nat Commun (2021) 12 pp. 5497-5497 [ Pubmed: 34535665 DOI: doi:10.1038/s41467-021-25813-y ]
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechococcus sp. PCC 7002)
- Phycobilisome 32.3 kda linker polypeptide, phycocyanin-associated, rod (32 kDa, Protein from Synechococcus sp. PCC 7002)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechococcus sp. PCC 7002)
- Allophycocyanin beta subunit (17 kDa, Protein from Synechococcus sp. PCC 7002)
- C-phycocyanin subunit alpha (17 kDa, Protein from Synechococcus sp. PCC 7002)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechococcus sp. PCC 7002)
- Phycobiliprotein apce (99 kDa, Protein from Synechococcus sp. PCC 7002)
- Cryo-em structure of cyanobacterial phycobilisome from synechococcus sp. pcc 7002 (6 MDa, Complex from Synechococcus sp. PCC 7002)
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechococcus sp. PCC 7002)
- Allophycocyanin alpha subunit (17 kDa, Protein from Synechococcus sp. PCC 7002)
- Phycocyanobilin (588 Da, Ligand)
- C-phycocyanin subunit beta (18 kDa, Protein from Synechococcus sp. PCC 7002)
Cryo-EM structure of cyanobacterial phycobilisome from Anabaena sp. PCC 7120
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7eyd
Q-score: 0.171
Zheng L, Zheng Z, Li X, Wang G, Zhang K, Wei P, Zhao J, Gao N
Nat Commun (2021) 12 pp. 5497-5497 [ Pubmed: 34535665 DOI: doi:10.1038/s41467-021-25813-y ]
- C-phycocyanin beta subunit (18 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Allophycocyanin subunit beta (17 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Phycobilisome rod-core linker polypeptide cpcg2 (28 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Phycobiliprotein apce (127 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Phycobilisome rod-core linker polypeptide cpcg4 (29 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Cryo-em structure of cyanobacterial phycobilisome from anabaena sp. pcc 7120 (7 MDa, Complex from Nostoc sp. PCC 7120 = FACHB-418)
- Phycobilisome rod-core linker polypeptide cpcg1 (31 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- C-phycocyanin alpha subunit (17 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Phycocyanobilin (588 Da, Ligand)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod (32 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Allophycocyanin subunit alpha 1 (17 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
The cryo-EM structure of HEV VLP
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6lat
Q-score: 0.534
Zheng Q, Jiang J, He M, Zheng Z, Yu H, Li T, Xue W, Tang Z, Ying D, Li Z, Song S, Liu X, Wang K, Zhang Z, Wang D, Wang Y, Yan X, Zhao Q, Zhang J, Gu Y, Li S, Xia N
PNAS (2019) [ Pubmed: 31818956 DOI: doi:10.1073/pnas.1916028116 ]
- Protein orf2 (51 kDa, Protein from Hepatitis E virus)
- Hepatitis e virus (Virus from Hepatitis E virus)
The cryo-EM structure of HEV VLP in complex with Fab 8C11
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6lb0
Q-score: 0.518
Zheng Q, Jiang J, He M, Zheng Z, Yu H, Li T, Xue W, Tang Z, Ying D, Li Z, Song S, Liu X, Wang K, Zhang Z, Wang D, Wang Y, Yan X, Zhao Q, Zhang J, Gu Y, Li S, Xia N
PNAS (2019) [ Pubmed: 31818956 DOI: doi:10.1073/pnas.1916028116 ]
- Protein orf2 (51 kDa, Protein from Hepatitis E virus)
- Hepatitis e virus (Virus from Hepatitis E virus)