TFIIH/Rad4-23-33 Complex in NER focused on Rad4-33
van Eeuwen T, Shim Y, Kim HJ, Zhao T, Basu S, Garcia BA, Kaplan CD, Min JH, Murakami K
Nat Commun (2021) 12 pp. 3338-3338 [ DOI: doi:10.1038/s41467-021-23684-x Pubmed: 34099686 ]
Structure of TFIIH in TFIIH/Rad4-Rad23-Rad33 DNA opening complex
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7k01
Q-score: 0.331
van Eeuwen T, Shim Y, Kim HJ, Zhao T, Basu S, Garcia BA, Kaplan CD, Min JH, Murakami K
Nat Commun (2021) 12 pp. 3338-3338 [ DOI: doi:10.1038/s41467-021-23684-x Pubmed: 34099686 ]
- General transcription and dna repair factor iih subunit tfb4 (37 kDa, Protein from Baker's yeast)
- General transcription and dna repair factor iih subunit tfb1 (72 kDa, Protein from Baker's yeast)
- Ternary complex of tfiih/rad4-rad23-rad33 with aaf damaged dna (420 MDa, Complex)
- Zinc ion (65 Da, Ligand)
- Dna repair helicase rad3 (89 kDa, Protein from Baker's yeast)
- General transcription and dna repair factor iih subunit ssl1 (52 kDa, Protein from Baker's yeast)
- General transcription and dna repair factor iih subunit tfb2 (58 kDa, Protein from Baker's yeast)
- Iron/sulfur cluster (351 Da, Ligand)
- Dna repair helicase rad25 (95 kDa, Protein from Baker's yeast)
- Rna polymerase ii transcription factor b subunit 5 (8 kDa, Protein from Baker's yeast)
Structure of TFIIH/Rad4-Rad23-Rad33/DNA in DNA opening
Resolution: 9.25 Å
EM Method: Single-particle
Fitted PDBs: 7k04
Q-score: 0.122
van Eeuwen T, Shim Y, Kim HJ, Zhao T, Basu S, Garcia BA, Kaplan CD, Min JH, Murakami K
Nat Commun (2021) 12 pp. 3338-3338 [ DOI: doi:10.1038/s41467-021-23684-x Pubmed: 34099686 ]
- Dna repair protein rad33 (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- General transcription and dna repair factor iih subunit tfb4 (37 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- Damaged dna strand (8 kDa, DNA from synthetic construct)
- General transcription and dna repair factor iih subunit tfb1 (72 kDa, Protein from Baker's yeast)
- Dna repair helicase rad3 (89 kDa, Protein from Baker's yeast)
- Dna repair protein rad4 (87 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- General transcription and dna repair factor iih subunit ssl1 (52 kDa, Protein from Baker's yeast)
- General transcription and dna repair factor iih subunit tfb2 (58 kDa, Protein from Baker's yeast)
- Calcium ion (40 Da, Ligand)
- Dna repair helicase rad25 (95 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Undamaged dna strand (8 kDa, DNA from synthetic construct)
- Iron/sulfur cluster (351 Da, Ligand)
- 10 component complex of rad4-23, rad33 and tfiih on damaged dna (Complex)
- Rna polymerase ii transcription factor b subunit 5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))