R. capsulatus cyt bc1 (CIII2) at 3.3A
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6xi0
Q-score: 0.48
Steimle S, van Eeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F
Nat Commun (2021) 12 pp. 929-929 [ Pubmed: 33568648 DOI: doi:10.1038/s41467-021-21051-4 ]
- Ubiquinol-cytochrome c reductase iron-sulfur subunit (20 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Cytochrome c1 (30 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome b (49 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Homodimer of ubiquinol:cytochrome c reductase (complex iii or cyt bc1 complex) (250 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Heme c (618 Da, Ligand)
R. capsulatus cyt bc1 with both FeS proteins in c position (CIII2 c-c)
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 6xkt
Q-score: 0.418
Steimle S, van Eeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F
Nat Commun (2021) 12 pp. 929-929 [ DOI: doi:10.1038/s41467-021-21051-4 Pubmed: 33568648 ]
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome c1 (30 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Ubiquinol-cytochrome c reductase iron-sulfur subunit (20 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Cytochrome b (49 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Heme c (618 Da, Ligand)
- Homodimer of ubiquinol:cytochrome c reductase (complex iii or cyt bc1 complex) (250 kDa, Complex from Rhodobacter capsulatus SB 1003)
R. capsulatus cyt bc1 with one FeS protein in b position and one in c position (CIII2 b-c)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6xku
Q-score: 0.342
Steimle S, van Eeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F
Nat Commun (2021) 12 pp. 929-929 [ DOI: doi:10.1038/s41467-021-21051-4 Pubmed: 33568648 ]
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome c1 (30 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Ubiquinol-cytochrome c reductase iron-sulfur subunit (20 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Cytochrome b (49 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Heme c (618 Da, Ligand)
- Ubiquinol:cytochrome c reductase (complex iii or cyt bc1 complex) (250 kDa, Complex from Rhodobacter capsulatus SB 1003)
R. capsulatus cyt bc1 with both FeS proteins in b position (CIII2 b-b)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6xkv
Q-score: 0.444
Steimle S, van Eeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F
Nat Commun (2021) 12 pp. 929-929 [ DOI: doi:10.1038/s41467-021-21051-4 Pubmed: 33568648 ]
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome c1 (30 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Ubiquinol-cytochrome c reductase iron-sulfur subunit (20 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Cytochrome b (49 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Heme c (618 Da, Ligand)
- Ubiquinol:cytochrome c reductase (complex iii or cyt bc1 complex) (250 kDa, Complex from Rhodobacter capsulatus SB 1003)
R. capsulatus CIII2CIV bipartite super-complex (SC-2A) with CcoH/cy
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 6xkw
Q-score: 0.18
Steimle S, van Eeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F
Nat Commun (2021) 12 pp. 929-929 [ DOI: doi:10.1038/s41467-021-21051-4 Pubmed: 33568648 ]
- Copper (ii) ion (63 Da, Ligand)
- Ccoh/cy (Complex from Rhodobacter capsulatus SB 1003)
- Cytochrome c oxidase, cbb3-type, subunit i (58 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Ciii2 (Complex from Rhodobacter capsulatus SB 1003)
- Civ (Complex from Rhodobacter capsulatus SB 1003)
- Cytochrome c1 (30 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome c-type cyt cy (20 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Cytochrome c oxidase, cbb3-type, subunit ii (26 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Ubiquinol-cytochrome c reductase iron-sulfur subunit (20 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Cytochrome b (49 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Heme c (618 Da, Ligand)
- Cbb3-type cytochrome c oxidase subunit ccop (31 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Ciii2civ bipartite super-complex (sc-2a) with ccoh/cy (Complex from Rhodobacter capsulatus SB 1003)
- Cytochrome c oxidase, cbb3-type, biogenesis protein ccoh (16 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
R. capsulatus CIII2CIV tripartite super-complex, conformation A (SC-1A)
Resolution: 6.1 Å
EM Method: Single-particle
Fitted PDBs: 6xkx
Q-score: 0.147
Steimle S, van Eeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F
Nat Commun (2021) 12 pp. 929-929 [ DOI: doi:10.1038/s41467-021-21051-4 Pubmed: 33568648 ]
- Copper (ii) ion (63 Da, Ligand)
- Ciii2 (Complex from Rhodobacter capsulatus SB 1003)
- Civ (Complex from Rhodobacter capsulatus SB 1003)
- Cytochrome c oxidase, cbb3-type, subunit i (58 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Cytochrome c1 (30 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ciii2civ tripartite super-complex, conformation a (sc-1a) (Complex from Rhodobacter capsulatus SB 1003)
- Ubiquinol-cytochrome c reductase iron-sulfur subunit (20 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Cytochrome b (49 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Cytochrome c oxidase, cbb3-type, subunit ii (26 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Cbb3-type cytochrome c oxidase subunit ccop,cytochrome c-type cyt cy (50 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Heme c (618 Da, Ligand)
R. capsulatus CIII2CIV tripartite super-complex, conformation B (SC-1B)
Resolution: 7.2 Å
EM Method: Single-particle
Fitted PDBs: 6xkz
Q-score: 0.122
Steimle S, van Eeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F
Nat Commun (2021) 12 pp. 929-929 [ Pubmed: 33568648 DOI: doi:10.1038/s41467-021-21051-4 ]
- Cytochrome c oxidase, cbb3-type, subunit i (58 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Ubiquinol-cytochrome c reductase iron-sulfur subunit (20 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Ciii2 (Complex from Rhodobacter capsulatus SB 1003)
- Ciii2civ tripartite super-complex, conformation b (sc-1b) (Complex from Rhodobacter capsulatus SB 1003)
- Cytochrome b (49 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Cytochrome c1 (30 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Heme c (618 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome c oxidase, cbb3-type, subunit ii (26 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
- Civ (Complex from Rhodobacter capsulatus SB 1003)
- Cbb3-type cytochrome c oxidase subunit ccop,cytochrome c-type cyt cy (50 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))