In situ structure of the Nitrosopumilus maritimus S-layer - Six-fold symmetry (C6)
Resolution: 3.4 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8c8o
Q-score: 0.434
von Kugelgen A, Cassidy CK, van Dorst S, Pagani LL, Batters C, Ford Z, Lowe J, Alva V, Stansfeld PJ, Bharat TAM
Nature (2024) 630 pp. 230-236 [ Pubmed: 38811725 DOI: doi:10.1038/s41586-024-07462-5 ]
In situ structure of the Nitrosopumilus maritimus S-layer - Composite map between C2 and C6
Resolution: 3.5 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8c8r
Q-score: 0.438
von Kugelgen A, Cassidy CK, van Dorst S, Pagani LL, Batters C, Ford Z, Lowe J, Alva V, Stansfeld PJ, Bharat TAM
Nature (2024) 630 pp. 230-236 [ Pubmed: 38811725 DOI: doi:10.1038/s41586-024-07462-5 ]
In vitro structure of the Nitrosopumilus maritimus S-layer - Six-fold symmetry (C6)
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8c8k
Q-score: 0.543
von Kugelgen A, Cassidy CK, van Dorst S, Pagani LL, Batters C, Ford Z, Lowe J, Alva V, Stansfeld PJ, Bharat TAM
Nature (2024) 630 pp. 230-236 [ Pubmed: 38811725 DOI: doi:10.1038/s41586-024-07462-5 ]
In vitro structure of the Nitrosopumilus maritimus S-layer - Two-fold symmetry (C2)
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 8c8l
Q-score: 0.595
von Kugelgen A, Cassidy CK, van Dorst S, Pagani LL, Batters C, Ford Z, Lowe J, Alva V, Stansfeld PJ, Bharat TAM
Nature (2024) 630 pp. 230-236 [ Pubmed: 38811725 DOI: doi:10.1038/s41586-024-07462-5 ]
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8c8m
Q-score: 0.556
von Kugelgen A, Cassidy CK, van Dorst S, Pagani LL, Batters C, Ford Z, Lowe J, Alva V, Stansfeld PJ, Bharat TAM
Nature (2024) 630 pp. 230-236 [ Pubmed: 38811725 DOI: doi:10.1038/s41586-024-07462-5 ]
In vitro Nitrosopumilus maritimus S-layer with NH4Cl
von Kugelgen A, Cassidy CK, van Dorst S, Pagani LL, Batters C, Ford Z, Lowe J, Alva V, Stansfeld PJ, Bharat TAM
Nature (2024) 630 pp. 230-236 [ Pubmed: 38811725 DOI: doi:10.1038/s41586-024-07462-5 ]
In situ structure of the Nitrosopumilus maritimus S-layer - Two-fold symmetry (C2)
Resolution: 3.4 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8c8n
Q-score: 0.489
von Kugelgen A, Cassidy CK, van Dorst S, Pagani LL, Batters C, Ford Z, Lowe J, Alva V, Stansfeld PJ, Bharat TAM
Nature (2024) 630 pp. 230-236 [ Pubmed: 38811725 DOI: doi:10.1038/s41586-024-07462-5 ]
Deinococcus radidurans HPI S-layer
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8cka
Q-score: 0.582
von Kugelgen A, van Dorst S, Yamashita K, Sexton DL, Tocheva EI, Murshudov G, Alva V, Bharat TAM
PNAS (2023) 120 pp. e2215808120-e2215808120 [ DOI: doi:10.1073/pnas.2215808120 Pubmed: 37043530 ]
- Structure of hexagonally packed intermediate-layer (hpi) protein (Cellular component from Deinococcus radiodurans)
- Hexagonally packed intermediate-layer surface protein (99 kDa, Protein from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422))
Cryo-EM structure of the CupE pilus from Pseudomonas aeruginosa
Resolution: 3.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 8cio
Q-score: 0.492
Bohning J, Dobbelstein AW, Sulkowski N, Eilers K, von Kugelgen A, Tarafder AK, Peak-Chew SY, Skehel M, Alva V, Filloux A, Bharat TAM
PLoS Pathog (2023) 19 pp. e1011177-e1011177 [ Pubmed: 37058467 DOI: doi:10.1371/journal.ppat.1011177 ]
- Scpu domain-containing protein (16 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Cupe pilus (Complex from Pseudomonas aeruginosa)
In situ structure of the Caulobacter crescentus S-layer
Resolution: 3.5 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8bqe
Q-score: 0.505
Zivanov J, Oton J, Ke Z, von Kugelgen A, Pyle E, Qu K, Morado D, Castano-Diez D, Zanetti G, Bharat TAM, Briggs JAG, Scheres SHW
eLife (2022) 11 [ DOI: doi:10.7554/eLife.83724 Pubmed: 36468689 ]
- S-layer protein rsaa (98 kDa, Protein from Caulobacter vibrioides NA1000)
- Caulobacter crescentus s-layer (Cellular component from Caulobacter vibrioides NA1000)
- Calcium ion (40 Da, Ligand)