particulate methane monooxygenase crosslinked with 2,2,2-trifluoroethanol bound
Resolution: 2.16 Å
EM Method: Single-particle
Fitted PDBs: 8sqw
Q-score: 0.609
Tucci FJ, Jodts RJ, Hoffman BM, Rosenzweig AC
Nat Catal (2023) 6 pp. 1194-1204 [ DOI: doi:10.1038/s41929-023-01051-x Pubmed: 38187819 ]
- Particulate methane monooxygenase (337 kDa, Complex from Methylococcus capsulatus str. Bath)
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- Trifluoroethanol (100 Da, Ligand)
- Ammonia monooxygenase/methane monooxygenase, subunit c family protein (27 kDa, Protein from Methylococcus capsulatus)
- Decane (142 Da, Ligand)
- Particulate methane monooxygenase beta subunit (27 kDa, Protein from Methylococcus capsulatus)
- 1,2-dihexanoyl-sn-glycero-3-phosphocholine (454 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Particulate methane monooxygenase alpha subunit (42 kDa, Protein from Methylococcus capsulatus)
- 1,2-didecanoyl-sn-glycero-3-phosphocholine (566 Da, Ligand)
- Water (18 Da, Ligand)
particulate methane monooxygenase crosslinked with 4,4,4-trifluorobutanol bound
Resolution: 2.18 Å
EM Method: Single-particle
Fitted PDBs: 8sr1
Q-score: 0.551
Tucci FJ, Jodts RJ, Hoffman BM, Rosenzweig AC
Nat Catal (2023) 6 pp. 1194-1204 [ DOI: doi:10.1038/s41929-023-01051-x Pubmed: 38187819 ]
- Ammonia monooxygenase/methane monooxygenase, subunit c family protein (27 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase (337 MDa, Complex from Methylococcus capsulatus str. Bath)
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- 4,4,4-trifluorobutan-1-ol (128 Da, Ligand)
- Decane (142 Da, Ligand)
- 1,2-dihexanoyl-sn-glycero-3-phosphocholine (454 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Particulate methane monooxygenase alpha subunit (42 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase beta subunit (27 kDa, Protein from Methylococcus capsulatus str. Bath)
- 1,2-didecanoyl-sn-glycero-3-phosphocholine (566 Da, Ligand)
- Water (18 Da, Ligand)
particulate methane monooxygenase incubated with 4,4,4-trifluorobutanol
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8sr2
Q-score: 0.452
Tucci FJ, Jodts RJ, Hoffman BM, Rosenzweig AC
Nat Catal (2023) [ ]
- Particulate methane monooxygenase alpha subunit (46 kDa, Protein from Methylococcus capsulatus str. Bath)
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- Ammonia monooxygenase/methane monooxygenase, subunit c family protein (29 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase beta subunit (28 kDa, Protein from Methylococcus capsulatus str. Bath)
- Decane (142 Da, Ligand)
- 1,2-dihexanoyl-sn-glycero-3-phosphocholine (454 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Particulate methane monooxygenase (337 MDa, Complex from Methylococcus capsulatus str. Bath)
- 1,2-didecanoyl-sn-glycero-3-phosphocholine (566 Da, Ligand)
- Water (18 Da, Ligand)
- Chloride ion (35 Da, Ligand)
particulate methane monooxygenase with 2,2,2-trifluoroethanol bound
Resolution: 2.19 Å
EM Method: Single-particle
Fitted PDBs: 8oyi
Q-score: 0.616
Tucci FJ, Jodts RJ, Hoffman BM, Rosenzweig AC
Nat Catal (2023) 6 pp. 1194-1204 [ DOI: doi:10.1038/s41929-023-01051-x Pubmed: 38187819 ]
- Particulate methane monooxygenase alpha subunit (46 kDa, Protein from Methylococcus capsulatus str. Bath)
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- Trifluoroethanol (100 Da, Ligand)
- Ammonia monooxygenase/methane monooxygenase, subunit c family protein (29 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase beta subunit (28 kDa, Protein from Methylococcus capsulatus str. Bath)
- Decane (142 Da, Ligand)
- 1,2-dihexanoyl-sn-glycero-3-phosphocholine (454 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Particulate methane monooxygenase (337 MDa, Complex from Methylococcus capsulatus str. Bath)
- 1,2-didecanoyl-sn-glycero-3-phosphocholine (566 Da, Ligand)
- Water (18 Da, Ligand)
Cryo-EM structure of Ca2+-bound mTMEM16F N562A mutant in Digitonin closed/closed
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 8b8k
Q-score: 0.501
Arndt M, Alvadia C, Straub MS, Clerico Mosina V, Paulino C, Dutzler R
Nat Commun (2022) 13 pp. 6692-6692 [ DOI: doi:10.1038/s41467-022-34497-x Pubmed: 36335104 ]
- Anoctamin-6 (113 kDa, Protein from Mus musculus)
- 1,2-didecanoyl-sn-glycero-3-phosphocholine (566 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Mtmem16f ca2+-bound (Complex from Mus musculus)
Resolution: 2.14 Å
EM Method: Single-particle
Fitted PDBs: 7s4h
Q-score: 0.684
Koo CW, Tucci FJ, He Y, Rosenzweig AC
Science (2022) 375 pp. 1287-1291 [ DOI: doi:10.1126/science.abm3282 Pubmed: 35298269 ]
- Particulate methane monooxygenase alpha subunit (46 kDa, Protein from Methylococcus capsulatus str. Bath)
- Pmmo complex in a native lipid nanodisc (Complex from Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath))
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- Ammonia monooxygenase/methane monooxygenase, subunit c family protein (29 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase beta subunit (28 kDa, Protein from Methylococcus capsulatus str. Bath)
- Decane (142 Da, Ligand)
- 1,2-dihexanoyl-sn-glycero-3-phosphocholine (454 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- 1,2-didecanoyl-sn-glycero-3-phosphocholine (566 Da, Ligand)
- Water (18 Da, Ligand)
Resolution: 2.26 Å
EM Method: Single-particle
Fitted PDBs: 7s4i
Q-score: 0.679
Koo CW, Tucci FJ, He Y, Rosenzweig AC
Science (2022) 375 pp. 1287-1291 [ DOI: doi:10.1126/science.abm3282 Pubmed: 35298269 ]
- Particulate methane monooxygenase alpha subunit (46 kDa, Protein from Methylococcus capsulatus str. Bath)
- Pmmo complex in a native lipid nanodisc (Complex from Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath))
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- Ammonia monooxygenase/methane monooxygenase, subunit c family protein (29 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase beta subunit (28 kDa, Protein from Methylococcus capsulatus str. Bath)
- Decane (142 Da, Ligand)
- 1,2-dihexanoyl-sn-glycero-3-phosphocholine (454 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- 1,2-didecanoyl-sn-glycero-3-phosphocholine (566 Da, Ligand)
- Water (18 Da, Ligand)
Resolution: 2.16 Å
EM Method: Single-particle
Fitted PDBs: 7s4j
Q-score: 0.66
Koo CW, Tucci FJ, He Y, Rosenzweig AC
Science (2022) 375 pp. 1287-1291 [ DOI: doi:10.1126/science.abm3282 Pubmed: 35298269 ]
- Particulate methane monooxygenase alpha subunit (46 kDa, Protein from Methylococcus capsulatus str. Bath)
- Pmmo complex in a native lipid nanodisc (Complex from Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath))
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- Ammonia monooxygenase/methane monooxygenase, subunit c family protein (29 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase beta subunit (28 kDa, Protein from Methylococcus capsulatus str. Bath)
- Decane (142 Da, Ligand)
- 1,2-dihexanoyl-sn-glycero-3-phosphocholine (454 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- 1,2-didecanoyl-sn-glycero-3-phosphocholine (566 Da, Ligand)
- Water (18 Da, Ligand)
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 7s4k
Q-score: 0.636
Koo CW, Tucci FJ, He Y, Rosenzweig AC
Science (2022) 375 pp. 1287-1291 [ DOI: doi:10.1126/science.abm3282 Pubmed: 35298269 ]
- Particulate methane monooxygenase alpha subunit (46 kDa, Protein from Methylococcus capsulatus str. Bath)
- Pmmo complex in a native lipid nanodisc (Complex from Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath))
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- Ammonia monooxygenase/methane monooxygenase, subunit c family protein (29 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase beta subunit (28 kDa, Protein from Methylococcus capsulatus str. Bath)
- Decane (142 Da, Ligand)
- 1,2-dihexanoyl-sn-glycero-3-phosphocholine (454 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- 1,2-didecanoyl-sn-glycero-3-phosphocholine (566 Da, Ligand)
- Water (18 Da, Ligand)
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 7t4o
Q-score: 0.428
Koo CW, Tucci FJ, He Y, Rosenzweig AC
Science (2022) 375 pp. 1287-1291 [ DOI: doi:10.1126/science.abm3282 Pubmed: 35298269 ]
- Particulate methane monooxygenase alpha subunit (46 kDa, Protein from Methylococcus capsulatus str. Bath)
- Pmmo complex in a native lipid nanodisc (Complex from Methylococcus capsulatus str. Bath)
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- Ammonia monooxygenase/methane monooxygenase, subunit c family protein (29 kDa, Protein from Methylococcus capsulatus str. Bath)
- Particulate methane monooxygenase beta subunit (28 kDa, Protein from Methylococcus capsulatus str. Bath)
- Decane (142 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- 1,2-didecanoyl-sn-glycero-3-phosphocholine (566 Da, Ligand)