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sample_name:"13 kDa" AND xref_links:"empiar"
Structure of mitochondrial complex I from Drosophila melanogaster, Flexible-class 1
Release date: March 29, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8esw
Q-score: 0.504
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8esw
Q-score: 0.504
Padavannil A, Murari A, Rhooms SK, Owusu-Ansah E, Letts JA
eLife (2023) 12 [ DOI: doi:10.7554/eLife.84415 Pubmed: 36952377 ]
Sample:
- Nadh dehydrogenase (ubiquinone) 13 kda b subunit (13 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (20 kDa, Protein from Drosophila melanogaster)
- Cardiolipin (1 kDa, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (17 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (14 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 (12 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 subunit c2 (12 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] flavoprotein 3 (2 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 (6 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 (11 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (46 kDa, Protein from Drosophila melanogaster)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial (30 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial (16 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (13 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 5 (65 kDa, Protein from Drosophila melanogaster)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Nadh dehydrogenase (ubiquinone) 24 kda subunit, isoform a (26 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 6 (20 kDa, Protein from Drosophila melanogaster)
- 2'-deoxyguanosine-5'-triphosphate (507 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial (22 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 (18 kDa, Protein from Drosophila melanogaster)
- Mitochondrial complex i from the thoracic muscles of d. melanogaster (Complex from Drosophila melanogaster)
- Complex i-49kd (52 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 4l (11 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (14 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase (ubiquinone) 39 kda subunit, isoform a (46 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 1 (36 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase 75 kda subunit, mitochondrial (78 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 2 (39 kDa, Protein from Drosophila melanogaster)
- Zinc ion (65 Da, Ligand)
- Rh45008p (8 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase (ubiquinone) 23 kda subunit (24 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 (18 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (51 kDa, Protein from Drosophila melanogaster)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Ld31474p (24 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (16 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 (19 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 (19 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (17 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (20 kDa, Protein from Drosophila melanogaster)
- Acyl carrier protein, mitochondrial (17 kDa, Protein from Drosophila melanogaster)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5 (12 kDa, Protein from Drosophila melanogaster)
- Iron/sulfur cluster (351 Da, Ligand)
- Geo11417p1 (10 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 4 (51 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (14 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 (13 kDa, Protein from Drosophila melanogaster)
- S-[2-({n-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate (568 Da, Ligand)
Structure of mitochondrial complex I from Drosophila melanogaster, Helix-locked state
Release date: March 29, 2023
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8esz
Q-score: 0.498
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8esz
Q-score: 0.498
Padavannil A, Murari A, Rhooms SK, Owusu-Ansah E, Letts JA
eLife (2023) 12 [ DOI: doi:10.7554/eLife.84415 Pubmed: 36952377 ]
Sample:
- Nadh dehydrogenase (ubiquinone) 13 kda b subunit (13 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (20 kDa, Protein from Drosophila melanogaster)
- Cardiolipin (1 kDa, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (17 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (14 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 (12 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] flavoprotein 3 (3 kDa, Protein from Drosophila melanogaster)
- (2r)-3-{[(s)-hydroxy(3-methylbutoxy)phosphoryl]oxy}-2-(octanoyloxy)propyl decanoate (522 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 subunit c2 (12 kDa, Protein from Drosophila melanogaster)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 (6 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 (11 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (46 kDa, Protein from Drosophila melanogaster)
- Flavin mononucleotide (456 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial (30 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial (16 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (13 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 5 (65 kDa, Protein from Drosophila melanogaster)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Nadh dehydrogenase (ubiquinone) 24 kda subunit, isoform a (26 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 6 (20 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from Drosophila melanogaster)
- Dodecane (170 Da, Ligand)
- 2'-deoxyguanosine-5'-triphosphate (507 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial (22 kDa, Protein from Drosophila melanogaster)
- Mitochondrial complex i from the thoracic muscle of drosophila melanogaster (Complex from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 (18 kDa, Protein from Drosophila melanogaster)
- Complex i-49kd (52 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 4l (11 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (14 kDa, Protein from Drosophila melanogaster)
- Ubiquinone-10 (863 Da, Ligand)
- Nadh dehydrogenase (ubiquinone) 39 kda subunit, isoform a (46 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 1 (36 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase 75 kda subunit, mitochondrial (78 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 2 (39 kDa, Protein from Drosophila melanogaster)
- N-octane (114 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Rh45008p (8 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase (ubiquinone) 23 kda subunit (24 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 (18 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (51 kDa, Protein from Drosophila melanogaster)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Ld31474p (24 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (16 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 (19 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 (19 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (17 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (20 kDa, Protein from Drosophila melanogaster)
- Acyl carrier protein, mitochondrial (17 kDa, Protein from Drosophila melanogaster)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Tetradecane (198 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5 (12 kDa, Protein from Drosophila melanogaster)
- Iron/sulfur cluster (351 Da, Ligand)
- Geo11417p1 (10 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 4 (51 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (14 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 (13 kDa, Protein from Drosophila melanogaster)
- S-[2-({n-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate (568 Da, Ligand)
Drosophila melanogaster complex I in the Active state (Dm1)
Release date: Jan. 18, 2023
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 8b9z
Q-score: 0.515
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 8b9z
Q-score: 0.515
Agip AA, Chung I, Sanchez-Martinez A, Whitworth AJ, Hirst J
eLife (2023) 12 [ Pubmed: 36622099 DOI: doi:10.7554/eLife.84424 ]
Sample:
- Cardiolipin (1 kDa, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 (6 kDa, Protein from Drosophila melanogaster)
- Rh45008p (7 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (17 kDa, Protein from Drosophila melanogaster)
- Mitochondrial respiratory complex i (1 MDa, Complex from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial (12 kDa, Protein from Drosophila melanogaster)
- Sodium ion (22 Da, Ligand)
- ~{s}-[2-[3-[[(2~{r})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{s})-3-oxidanyltetradecanethioate (584 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (48 kDa, Protein from Drosophila melanogaster)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 (11 kDa, Protein from Drosophila melanogaster)
- Flavin mononucleotide (456 Da, Ligand)
- Nadh dehydrogenase (ubiquinone) 24 kda subunit, isoform a (23 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 5 (65 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (13 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (16 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (8 kDa, Protein from Drosophila melanogaster)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- 2'-deoxyguanosine-5'-triphosphate (507 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (15 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase (ubiquinone) 39 kda subunit, isoform a (42 kDa, Protein from Drosophila melanogaster)
- Ubiquinone-9 (795 Da, Ligand)
- Nadh dehydrogenase (ubiquinone) 13 kda b subunit (13 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (10 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase (ubiquinone) 23 kda subunit (21 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (16 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 4l (11 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial (6 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 1 (36 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase 75 kda subunit, mitochondrial (78 kDa, Protein from Drosophila melanogaster)
- Geo11417p1 (7 kDa, Protein from Drosophila melanogaster)
- Ld31474p (20 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 4 (51 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 2 (39 kDa, Protein from Drosophila melanogaster)
- Zinc ion (65 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial (24 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (17 kDa, Protein from Drosophila melanogaster)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 (18 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (42 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial (17 kDa, Protein from Drosophila melanogaster)
- Complex i-49kd (48 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5 (11 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 6 (19 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 subunit c2 (12 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 (9 kDa, Protein from Drosophila melanogaster)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 (12 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 (18 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (13 kDa, Protein from Drosophila melanogaster)
- Acyl carrier protein, mitochondrial (9 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 (19 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 (18 kDa, Protein from Drosophila melanogaster)
Drosophila melanogaster complex I in the Twisted state (Dm2)
Release date: Jan. 18, 2023
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 8ba0
Q-score: 0.435
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 8ba0
Q-score: 0.435
Agip AA, Chung I, Sanchez-Martinez A, Whitworth AJ, Hirst J
eLife (2023) 12 [ Pubmed: 36622099 DOI: doi:10.7554/eLife.84424 ]
Sample:
- Cardiolipin (1 kDa, Ligand)
- Rh45008p (7 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial (12 kDa, Protein from Drosophila melanogaster)
- Mitochondrial respiratory complex i (1 MDa, Complex from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (16 kDa, Protein from Drosophila melanogaster)
- ~{s}-[2-[3-[[(2~{r})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{s})-3-oxidanyltetradecanethioate (584 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 (6 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 4l (11 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 (11 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (48 kDa, Protein from Drosophila melanogaster)
- Flavin mononucleotide (456 Da, Ligand)
- Geo11417p1 (6 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase (ubiquinone) 24 kda subunit, isoform a (23 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 5 (65 kDa, Protein from Drosophila melanogaster)
- Complex i-49kd (48 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (13 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (16 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (8 kDa, Protein from Drosophila melanogaster)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- 2'-deoxyguanosine-5'-triphosphate (507 Da, Ligand)
- Nadh dehydrogenase (ubiquinone) 39 kda subunit, isoform a (42 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase (ubiquinone) 13 kda b subunit (13 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (10 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase (ubiquinone) 23 kda subunit (21 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (16 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial (6 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 1 (36 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase 75 kda subunit, mitochondrial (78 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 6 (19 kDa, Protein from Drosophila melanogaster)
- Ld31474p (20 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 4 (51 kDa, Protein from Drosophila melanogaster)
- Nadh-ubiquinone oxidoreductase chain 2 (39 kDa, Protein from Drosophila melanogaster)
- Zinc ion (65 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial (24 kDa, Protein from Drosophila melanogaster)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 (18 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (42 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial (17 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5 (11 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 subunit c2 (12 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 (9 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (14 kDa, Protein from Drosophila melanogaster)
- Acyl carrier protein, mitochondrial (17 kDa, Protein from Drosophila melanogaster)
- Iron/sulfur cluster (351 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 (12 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 (18 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (13 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (15 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 (19 kDa, Protein from Drosophila melanogaster)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 (18 kDa, Protein from Drosophila melanogaster)
Structure of a pre-catalytic spliceosome (B2 map)
Release date: May 31, 2017
Resolution: 7.2 Å
EM Method: Single-particle
Fitted PDBs: 5nrl
Q-score: 0.117
Resolution: 7.2 Å
EM Method: Single-particle
Fitted PDBs: 5nrl
Q-score: 0.117
Nature (2017) 546 pp. 617-621 [ Pubmed: 28530653 DOI: doi:10.1038/nature22799 ]
Sample:
- U6 snrna (35 kDa, RNA from Saccharomyces cerevisiae)
- U6 snrna-associated sm-like protein lsm8 (12 kDa, Protein from Saccharomyces cerevisiae)
- U4/u6 small nuclear ribonucleoprotein prp4 (52 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor rds3 (12 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor snu114 (114 kDa, Protein from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein sm d1 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U6 snrna-associated sm-like protein lsm6 (9 kDa, Protein from Saccharomyces cerevisiae )
- Small nuclear ribonucleoprotein sm d3 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Pre-mrna-splicing factor 8 (279 kDa, Protein from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein f (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Pre-mrna-splicing helicase brr2 (246 kDa, Protein from Saccharomyces cerevisiae)
- U2 small nuclear ribonucleoprotein a' (27 kDa, Protein from Saccharomyces cerevisiae)
- 13 kda ribonucleoprotein-associated protein (13 kDa, Protein from Saccharomyces cerevisiae)
- U6 snrna-associated sm-like protein lsm7 (13 kDa, Protein from Saccharomyces cerevisiae)
- Protein hsh49 (24 kDa, Protein from Saccharomyces cerevisiae)
- U4/u6 small nuclear ribonucleoprotein prp3 (55 kDa, Protein from Saccharomyces cerevisiae)
- Yeast ubc4 gene for ubiquitin-conjugating enzyme (30 kDa, RNA from Saccharomyces cerevisiae)
- U2 snrna (376 kDa, RNA from Saccharomyces cerevisiae)
- Unknown (7 kDa, Protein from Saccharomyces cerevisiae)
- U6 snrna-associated sm-like protein lsm3 (10 kDa, Protein from Saccharomyces cerevisiae)
- U6 snrna-associated sm-like protein lsm5 (10 kDa, Protein from Saccharomyces cerevisiae)
- U5 snrna (68 kDa, RNA from Saccharomyces cerevisiae)
- U2 small nuclear ribonucleoprotein b'' (12 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-processing factor 31 (56 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor rse1 (153 kDa, Protein from Saccharomyces cerevisiae)
- U4 snrna (51 kDa, RNA from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor prp21 (33 kDa, Protein from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein-associated protein b (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- U2 snrnp component hsh155 (110 kDa, Protein from Saccharomyces cerevisiae)
- U6 snrna-associated sm-like protein lsm4 (21 kDa, Protein from Saccharomyces cerevisiae )
- Pre-mrna-splicing factor prp11 (29 kDa, Protein from Saccharomyces cerevisiae)
- 66 kda u4/u6.u5 small nuclear ribonucleoprotein component (66 kDa, Protein from Saccharomyces cerevisiae)
- Cold sensitive u2 snrna suppressor 1 (50 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor prp9 (63 kDa, Protein from Saccharomyces cerevisiae)
- 23 kda u4/u6.u5 small nuclear ribonucleoprotein component (22 kDa, Protein from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein sm d2 (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Pre-mrna-splicing factor 6 (104 kDa, Protein from Saccharomyces cerevisiae)
- U6 snrna-associated sm-like protein lsm2 (11 kDa, Protein from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein g (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Pre-mrna-splicing factor 38 (27 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor spp381 (33 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rds3 complex subunit 10 (10 kDa, Protein from Saccharomyces cerevisiae )
- Small nuclear ribonucleoprotein e (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Spliceosomal protein dib1 (16 kDa, Protein from Saccharomyces cerevisiae)
- Pre-catalytic b complex spliceosome (2 MDa, Complex from Saccharomyces cerevisiae)
The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom
Release date: Jan. 27, 2016
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5gan
Q-score: 0.254
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5gan
Q-score: 0.254
Nguyen TH, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SH, Nagai K
Nature (2016) 530 pp. 298-302 [ Pubmed: 26829225 DOI: doi:10.1038/nature16940 ]
Sample:
- Small nuclear ribonucleoprotein-associated protein b (22 kDa, Protein from Saccharomyces cerevisiae)
- U6 snrna (35 kDa, RNA from Saccharomyces cerevisiae)
- U6 snrna-associated sm-like protein lsm8 (12 kDa, Protein from Saccharomyces cerevisiae)
- U4/u6 small nuclear ribonucleoprotein prp4 (52 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor 8 (279 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing helicase brr2 (246 kDa, Protein from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein g (8 kDa, Protein from Saccharomyces cerevisiae)
- 13 kda ribonucleoprotein-associated protein (13 kDa, Protein from Saccharomyces cerevisiae)
- U6 snrna-associated sm-like protein lsm7 (13 kDa, Protein from Saccharomyces cerevisiae)
- U4/u6 small nuclear ribonucleoprotein prp3 (55 kDa, Protein from Saccharomyces cerevisiae)
- U6 snrna-associated sm-like protein lsm4 (21 kDa, Protein from Saccharomyces cerevisiae)
- Unknown protein (8 kDa, Protein from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein sm d3 (11 kDa, Protein from Saccharomyces cerevisiae)
- U6 snrna-associated sm-like protein lsm3 (10 kDa, Protein from Saccharomyces cerevisiae)
- The overall structure of the yeast spliceosomal u4/u6.u5 tri-snrnp (1 MDa, Complex from Saccharomyces cerevisiae)
- U6 snrna-associated sm-like protein lsm5 (10 kDa, Protein from Saccharomyces cerevisiae)
- U5 snrna (68 kDa, RNA from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein e (10 kDa, Protein from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein sm d1 (16 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-processing factor 31 (56 kDa, Protein from Saccharomyces cerevisiae)
- Snu66 (28 kDa, Protein from Saccharomyces cerevisiae)
- U4 snrna (51 kDa, RNA from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein sm d2 (12 kDa, Protein from Saccharomyces cerevisiae)
- U6 snrna-associated sm-like protein lsm6 (9 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor 6 (104 kDa, Protein from Saccharomyces cerevisiae)
- U6 snrna-associated sm-like protein lsm2 (11 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor snu114 (114 kDa, Protein from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein f (9 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Spliceosomal protein dib1 (16 kDa, Protein from Saccharomyces cerevisiae)