Yu J, Rao P, Clark S, Mitra J, Ha T, Gouaux E
Nature (2021) 594 pp. 448-453 [ DOI: doi:10.1038/s41586-021-03540-0 Pubmed: 33981040 ]
- Beta-d-mannopyranose (180 Da, Ligand)
- {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2h)-yl]methyl}phosphonic acid (409 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 15f1 fab (Complex from Mus musculus)
- Glua1/a2/a3-asymmetric-conformation1 (Complex from Mus musculus)
- Glutamate receptor (98 kDa, Protein from Mouse)
- Glua1/a2/a3-asymmetric-conformation1 recognized by antibody fragments (Complex)
- Protein cornichon homolog 2 (18 kDa, Protein from Mouse)
- 15f1 fab heavy chain (27 kDa, Protein from Mus musculus)
- Glutamate receptor 1 (101 kDa, Protein from Mouse)
- Glutamate receptor 3 (100 kDa, Protein from Mouse)
- Other antibody fragments (Complex from Mus musculus)
- 6-[2-chloro-6-(trifluoromethoxy)phenyl]-1h-benzimidazol-2-ol (328 Da, Ligand)
- 5b2 fab (19 kDa, Protein from Mus musculus)
- Voltage-dependent calcium channel gamma-8 subunit (43 kDa, Protein from Mouse)
- 15f1 fab light chain (25 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
- 11b8 scfv (27 kDa, Protein from Mus musculus)
Yu J, Rao P, Clark S, Mitra J, Ha T, Gouaux E
Nature (2021) 594 pp. 448-453 [ DOI: doi:10.1038/s41586-021-03540-0 Pubmed: 33981040 ]
- 11b8 scfv (Complex from Mus musculus)
- {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2h)-yl]methyl}phosphonic acid (409 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 15f1 fab (Complex from Mus musculus)
- 15f1 fab heavy chain (27 kDa, Protein from Mus musculus)
- Glutamate receptor (98 kDa, Protein from Mouse)
- Protein cornichon homolog 2 (18 kDa, Protein from Mouse)
- Glutamate receptor 1 (101 kDa, Protein from Mouse)
- Glutamate receptor 3 (100 kDa, Protein from Mouse)
- 5b2 fab (Complex from Mus musculus)
- Glua1/a2/a3-asymmetric-conformation2 bound to ab fragments (Complex)
- 6-[2-chloro-6-(trifluoromethoxy)phenyl]-1h-benzimidazol-2-ol (328 Da, Ligand)
- 5b2 fab (19 kDa, Protein from Mus musculus)
- Voltage-dependent calcium channel gamma-8 subunit (43 kDa, Protein from Mouse)
- 15f1 fab light chain (25 kDa, Protein from Mus musculus)
- Glua1/a2/a3-asymmetric-conformation2 (Complex from Mus musculus)
- Water (18 Da, Ligand)
- 11b8 scfv (27 kDa, Protein from Mus musculus)
Yu J, Rao P, Clark S, Mitra J, Ha T, Gouaux E
Nature (2021) 594 pp. 448-453 [ DOI: doi:10.1038/s41586-021-03540-0 Pubmed: 33981040 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 15f1 fab (Complex from Mus musculus)
- Glua2/a3-symmetric-conformation bound to fabs (Complex)
- 15f1 fab heavy chain (27 kDa, Protein from Mus musculus)
- Glutamate receptor (98 kDa, Protein from Mouse)
- Protein cornichon homolog 2 (18 kDa, Protein from Mouse)
- Glutamate receptor 3 (100 kDa, Protein from Mouse)
- 5b2 fab (Complex from Mus musculus)
- 5b2 fab heavy chain (21 kDa, Protein from Mus musculus)
- Voltage-dependent calcium channel gamma-8 subunit (43 kDa, Protein from Mouse)
- 15f1 fab light chain (25 kDa, Protein from Mus musculus)
- 5b2 fab light chain (18 kDa, Protein from Mus musculus)
- Glua2/a3-symmetric-conformation (Complex from Mus musculus)
Yu J, Rao P, Clark S, Mitra J, Ha T, Gouaux E
Nature (2021) 594 pp. 448-453 [ DOI: doi:10.1038/s41586-021-03540-0 Pubmed: 33981040 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 15f1 fab (Complex from Mus musculus)
- 15f1 fab heavy chain (27 kDa, Protein from Mus musculus)
- Glutamate receptor (98 kDa, Protein from Mouse)
- Protein cornichon homolog 2 (18 kDa, Protein from Mouse)
- Glutamate receptor 3 (100 kDa, Protein from Mouse)
- 5b2 fab (Complex from Mus musculus)
- Glua2/a3-asymmetric-conformation (Complex from Mus musculus)
- 5b2 fab heavy chain (21 kDa, Protein from Mus musculus)
- Voltage-dependent calcium channel gamma-8 subunit (43 kDa, Protein from Mouse)
- 15f1 fab light chain (25 kDa, Protein from Mus musculus)
- 5b2 fab light chain (18 kDa, Protein from Mus musculus)
- Glua2/a3-asymmetric-conformation1 bound to fabs (Complex)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ldd
Q-score: 0.25
Yu J, Rao P, Clark S, Mitra J, Ha T, Gouaux E
Nature (2021) 594 pp. 448-453 [ DOI: doi:10.1038/s41586-021-03540-0 Pubmed: 33981040 ]
- Glutamate receptor (98 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Glua1/a2-symmetric-conformation bound to antibody fragments (Complex)
- Hexadecane (226 Da, Ligand)
- Nonane (128 Da, Ligand)
- 6-[2-chloro-6-(trifluoromethoxy)phenyl]-1h-benzimidazol-2-ol (328 Da, Ligand)
- 15f1 fab light chain (25 kDa, Protein from Mus musculus)
- 11b8 scfv (Complex from Mus musculus)
- Protein cornichon homolog 2 (18 kDa, Protein from Mus musculus)
- N-octane (114 Da, Ligand)
- 11b8 scfv (27 kDa, Protein from Mus musculus)
- 15f1 fab heavy chain (27 kDa, Protein from Mus musculus)
- Glua1/a2-symmetric-conformation (Complex from Mus musculus)
- Decane (142 Da, Ligand)
- Voltage-dependent calcium channel gamma-8 subunit (43 kDa, Protein from Mus musculus)
- Dodecane (170 Da, Ligand)
- Tetradecane (198 Da, Ligand)
- {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2h)-yl]methyl}phosphonic acid (409 Da, Ligand)
- 15f1 fab (Complex from Mus musculus)
- Heptane (100 Da, Ligand)
- Glutamate receptor 1 (101 kDa, Protein from Mus musculus)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7lde
Q-score: 0.221
Yu J, Rao P, Clark S, Mitra J, Ha T, Gouaux E
Nature (2021) 594 pp. 448-453 [ DOI: doi:10.1038/s41586-021-03540-0 Pubmed: 33981040 ]
- Glutamate receptor (98 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hexadecane (226 Da, Ligand)
- Nonane (128 Da, Ligand)
- 6-[2-chloro-6-(trifluoromethoxy)phenyl]-1h-benzimidazol-2-ol (328 Da, Ligand)
- 15f1 fab light chain (25 kDa, Protein from Mus musculus)
- 11b8 scfv (Complex from Mus musculus)
- Glua1/a2-asymmetric-conformation bound to antibody fragments (Complex)
- Protein cornichon homolog 2 (18 kDa, Protein from Mus musculus)
- Glua1/a2-asymmetric-conformation (Complex from Mus musculus)
- N-octane (114 Da, Ligand)
- 11b8 scfv (27 kDa, Protein from Mus musculus)
- 15f1 fab heavy chain (27 kDa, Protein from Mus musculus)
- Decane (142 Da, Ligand)
- Voltage-dependent calcium channel gamma-8 subunit (43 kDa, Protein from Mus musculus)
- Dodecane (170 Da, Ligand)
- Tetradecane (198 Da, Ligand)
- {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2h)-yl]methyl}phosphonic acid (409 Da, Ligand)
- 15f1 fab (Complex from Mus musculus)
- Heptane (100 Da, Ligand)
- Glutamate receptor 1 (101 kDa, Protein from Mus musculus)
Resolution: 6.7 Å
EM Method: Single-particle
Fitted PDBs: 6njl
Q-score: 0.001
Zhao Y, Chen S, Swensen AC, Qian WJ, Gouaux E
Science (2019) 364 pp. 355-362 [ DOI: doi:10.1126/science.aaw8250 Pubmed: 30975770 ]
- Native a1a2a1a2 complex bound with mpqx (Complex from Rattus norvegicus)
- Voltage-dependent calcium channel gamma-2 subunit (35 kDa, Protein from Rattus norvegicus)
- Glutamate receptor 1 (101 kDa, Protein from Rattus norvegicus)
- {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2h)-yl]methyl}phosphonic acid (409 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 15f1 fab heavy chain (27 kDa, Protein from Mus musculus)
- A'/c' auxiliary proteins (13 kDa, Protein from Rattus norvegicus)
- 15f1 fab light chain (25 kDa, Protein from Mus musculus)
- Glutamate receptor 2 (98 kDa, Protein from Rattus norvegicus)
- 11b8 scfv (27 kDa, Protein from Mus musculus)
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 6njm
Q-score: -0.005
Zhao Y, Chen S, Swensen AC, Qian WJ, Gouaux E
Science (2019) 364 pp. 355-362 [ DOI: doi:10.1126/science.aaw8250 Pubmed: 30975770 ]
- Voltage-dependent calcium channel gamma-2 subunit (35 kDa, Protein from Rattus norvegicus)
- A'-c' auxiliary proteins (13 kDa, Protein from Rattus norvegicus)
- {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2h)-yl]methyl}phosphonic acid (409 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Native a3a2a3a2 complex bound with mpqx (Complex from Rattus norvegicus)
- 5b2 fab heavy chain (21 kDa, Protein from Rattus norvegicus)
- Lbd-tmd layers of native a3a2a3a2 nampar complex (Complex from Rattus norvegicus)
- 15f1 fab heavy chain (27 kDa, Protein from Mus musculus)
- Atd-lbd layers of native a3a2a3a2 nampar complex (Complex from Rattus norvegicus)
- Glutamate receptor 3 (100 kDa, Protein from Rattus norvegicus)
- 5b2 fab light chain (18 kDa, Protein from Rattus norvegicus)
- 15f1 fab light chain (25 kDa, Protein from Mus musculus)
- Glutamate receptor 2 (98 kDa, Protein from Rattus norvegicus)
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 6njn
Q-score: 0.012
Zhao Y, Chen S, Swensen AC, Qian WJ, Gouaux E
Science (2019) 364 pp. 355-362 [ DOI: doi:10.1126/science.aaw8250 Pubmed: 30975770 ]
- Voltage-dependent calcium channel gamma-2 subunit (35 kDa, Protein from Rattus norvegicus)
- Glutamate receptor 1 (101 kDa, Protein from Rattus norvegicus)
- A'-c' auxiliary proteins (13 kDa, Protein from Rattus norvegicus)
- 15f1 fab light chain (25 kDa, Protein from Mus musculus)
- 5b2 fab (19 kDa, Protein from Rattus norvegicus)
- 15f1 fab heavy chain (27 kDa, Protein from Mus musculus)
- {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2h)-yl]methyl}phosphonic acid (409 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Atd layer of native tri-heteromeric a1a2a3a2 ampar (Complex from Rattus norvegicus)
- Glutamate receptor 3 (100 kDa, Protein from Rattus norvegicus)
- Atd-lbd layers of native tri-heteromeric a1a2a3a2 ampar (Complex from Rattus norvegicus)
- Native glua1/glua2/glua3/glua2 complex bound with mpqx (Complex from Rattus norvegicus)
- 11b8 scfv (27 kDa, Protein from Mus musculus)
- Glutamate receptor 2 (98 kDa, Protein from Rattus norvegicus)
- Lbd-tmd layers of native tri-heteromeric a1a2a3a2 ampar (Complex from Rattus norvegicus)