Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8rdv
Q-score: 0.627
Helena-Bueno K, Rybak MY, Ekemezie CL, Sullivan R, Brown CR, Dingwall C, Basle A, Schneider C, Connolly JPR, Blaza JN, Csorgo B, Moynihan PJ, Gagnon MG, Hill CH, Melnikov SV
Nature (2024) 626 pp. 1125-1132 [ Pubmed: 38355796 DOI: doi:10.1038/s41586-024-07041-8 ]
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul13 (15 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul18 (12 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us4 (24 kDa, Protein from Psychrobacter urativorans)
- 16s rrna (514 kDa, RNA from Psychrobacter urativorans)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs18 (8 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us17 (10 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl17 (13 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us2 (29 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl19 (14 kDa, Protein from Psychrobacter urativorans)
- 5s rrna (36 kDa, RNA from Psychrobacter urativorans)
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us5 (18 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl31b (10 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs16 (9 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul22 (11 kDa, Protein from Psychrobacter urativorans)
- Methyl-accepting chemotaxis protein (41 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl28 (9 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us7 (17 kDa, Protein from Psychrobacter urativorans)
- Ribosomes isolated from ice-treated cultures of psychrobacter urativorans. (Complex from Psychrobacter urativorans)
- Large ribosomal subunit protein bl32 (7 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul5 (19 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Psychrobacter urativorans)
- 23s rrna (933 kDa, RNA from Psychrobacter urativorans)
- Heterogenous mrna (1 kDa, RNA from Psychrobacter urativorans)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul4 (21 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Psychrobacter urativorans)
- Heterogenous trna (23 kDa, RNA from Psychrobacter urativorans)
- Large ribosomal subunit protein bl33 (6 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs6 (15 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl27 (9 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl36 (4 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Psychrobacter urativorans)
- Elongation factor tu (43 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl25 (23 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul23 (12 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl9 (18 kDa, Protein from Psychrobacter urativorans)
Bacillus subtilis MutS2-collided disome complex (stalled 70S)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8qpp
Q-score: 0.415
Park EN, Mackens-Kiani T, Berhane R, Esser H, Erdenebat C, Burroughs AM, Berninghausen O, Aravind L, Beckmann R, Green R, Buskirk AR
EMBO J (2024) 43 pp. 484-506 [ Pubmed: 38177497 DOI: doi:10.1038/s44318-023-00010-3 ]
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl28 (6 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis)
- 16s rrna (1533-mer) (496 kDa, RNA from Bacillus subtilis)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul23 (10 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl17 (13 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl27 (8 kDa, Protein from Bacillus subtilis)
- 23s ribosomal rna (949 kDa, RNA from Bacillus subtilis)
- 30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis)
- Trna (77-mer) (24 kDa, RNA from Bacillus subtilis)
- 5s rrna (112-mer) (36 kDa, RNA from Bacillus subtilis)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul24 (10 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl33 (5 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Bacillus subtilis)
- Mrna (33-mer) (10 kDa, RNA from Bacillus subtilis)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein bl31 (7 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l9 (16 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis)
- Muts2-disome complex from b. subtilis, focus refined, stalled 70s (Complex from Bacillus subtilis)
- Endonuclease muts2 (87 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Bacillus subtilis)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis)
Methyltransferase RmtC bound to the 30S ribosomal subunit
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8ghu
Q-score: 0.259
Srinivas P, Nosrati M, Zelinskaya N, Dey D, Comstock LR, Dunham CM, Conn GL
bioRxiv (2023) [ Pubmed: 36993224 DOI: doi:10.1101/2023.03.13.532395 ]
- 16s rrna (guanine(1405)-n(7))-methyltransferase (Complex from Proteus mirabilis)
- 16s rrna (496 kDa, RNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 16s rrna (guanine(1405)-n(7))-methyltransferase (32 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6, non-modified isoform (11 kDa, Protein from Escherichia coli)
- 16s rrna methyltransferase rmtc bound to the 30s ribosomal subunit (Complex from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
Translating 70S ribosome in the unrotated state (P and E, tRNAs)
Resolution: 1.55 Å
EM Method: Single-particle
Fitted PDBs: 8b0x
Q-score: 0.767
Fromm SA, O'Connor KM, Purdy M, Bhatt PR, Loughran G, Atkins JF, Jomaa A, Mattei S
Nat Commun (2023) 14 pp. 1095-1095 [ DOI: doi:10.1038/s41467-023-36742-3 Pubmed: 36841832 ]
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli B)
- 23s rrna (948 kDa, RNA from Escherichia coli B)
- 5s rrna (38 kDa, RNA from Escherichia coli B)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli B)
- 16s rrna (503 kDa, RNA from Escherichia coli B)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli B)
- 70s ribosome (2 MDa, Complex from Escherichia coli B)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli B)
- Water (18 Da, Ligand)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli B)
- Mrna (1 kDa, RNA from Escherichia coli B)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli B)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli B)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli B)
- Potassium ion (39 Da, Ligand)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli B)
- P-site trna (24 kDa, RNA from Escherichia coli B)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli B)
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7p7r
Q-score: -0.017
Crowe-McAuliffe C, Murina V, Turnbull KJ, Huch S, Kasari M, Takada H, Nersisyan L, Sundsfjord A, Hegstad K, Atkinson GC, Pelechano V, Wilson DN, Hauryliuk V
Nat Commun (2022) 13 pp. 1860-1860 [ Pubmed: 35387982 DOI: doi:10.1038/s41467-022-29274-9 ]
- 30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis V583)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Are-abc-f family resistance factor poxta (70 kDa, Complex from Enterococcus faecalis)
- Are-abc-f family resistance factor poxta (67 kDa, Protein from Enterococcus faecalis V583)
- Mrna (6 kDa, RNA from Enterococcus faecalis V583)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 5s rrna (37 kDa, RNA from Enterococcus faecalis V583)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l33 3 (5 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 70s ribosome (2 MDa, Complex from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Magnesium ion (24 Da, Ligand)
- Spectinomycin (332 Da, Ligand)
- 30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Potassium ion (39 Da, Ligand)
- Trna-fmet (24 kDa, RNA from Enterococcus faecalis V583)
- 50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 16s rrna (504 kDa, RNA from Enterococcus faecalis V583)
- 30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 23s rrna (944 kDa, RNA from Enterococcus faecalis V583)
- 50s ribosomal protein l1 (24 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Complex of poxta-eq2 bound to the 70s ribosome from e. faecalis (initiation complex), state i. (2 MDa, Complex)
- 50s ribosomal protein l32-3 (6 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7p7q
Q-score: 0.572
Crowe-McAuliffe C, Murina V, Turnbull KJ, Huch S, Kasari M, Takada H, Nersisyan L, Sundsfjord A, Hegstad K, Atkinson GC, Pelechano V, Wilson DN, Hauryliuk V
Nat Commun (2022) 13 pp. 1860-1860 [ Pubmed: 35387982 DOI: doi:10.1038/s41467-022-29274-9 ]
- 30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- Poxa (Complex from Enterococcus faecalis)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l1 (24 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- 1,4-diaminobutane (88 Da, Ligand)
- 70s ribosome (Complex from Enterococcus faecalis)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 23s rrna (943 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l32-3 (6 kDa, Protein from Enterococcus faecalis)
- 16s rrna (504 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l33 3 (6 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis)
- Water (18 Da, Ligand)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- Complex of poxta-eq2 bound to the 70s ribosome from e. faecalis (initiation complex), state i. (Complex)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- Spectinomycin (332 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis)
- Mrna (6 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis)
- Are-abc-f family resistance factor poxta (67 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- Fmet-trna (24 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state II
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7p7s
Q-score: 0.526
Crowe-McAuliffe C, Murina V, Turnbull KJ, Huch S, Kasari M, Takada H, Nersisyan L, Sundsfjord A, Hegstad K, Atkinson GC, Pelechano V, Wilson DN, Hauryliuk V
Nat Commun (2022) 13 pp. 1860-1860 [ Pubmed: 35387982 DOI: doi:10.1038/s41467-022-29274-9 ]
- 30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l1 (24 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- Complex of poxta-eq2 bound to the 70s ribosome from e. faecalis (initiation complex), state ii. (Complex)
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- 23s rrna (944 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- Are-abc-f family resistance factor poxta (Complex from Enterococcus faecalis)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- Spectinomycin (332 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- 70s ribosome (Complex from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- Trna-fmet (25 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis)
- 16s rrna (504 kDa, RNA from Enterococcus faecalis)
- Mrna (6 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis)
- Are-abc-f family resistance factor poxta (67 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7p7t
Q-score: 0.534
Crowe-McAuliffe C, Murina V, Turnbull KJ, Huch S, Kasari M, Takada H, Nersisyan L, Sundsfjord A, Hegstad K, Atkinson GC, Pelechano V, Wilson DN, Hauryliuk V
Nat Commun (2022) 13 pp. 1860-1860 [ Pubmed: 35387982 DOI: doi:10.1038/s41467-022-29274-9 ]
- Trna-fmet (24 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis)
- Mrna (6 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l1 (24 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- A-site trna (Complex from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- 23s rrna (944 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis)
- Water (18 Da, Ligand)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- A-site trna (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis)
- 70s ribosome (Cellular component from Enterococcus faecalis)
- 30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- Are-abc-f family resistance factor poxta (Complex from Enterococcus faecalis)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- Spectinomycin (332 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- Complex of poxta-eq2 bound to the 70s ribosome from e. faecalis (initiation complex), state iii. (Complex)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
- 16s rrna (504 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis)
- Are-abc-f family resistance factor poxta (67 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
E. faecalis 70S ribosome with P-tRNA, state IV
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7p7u
Q-score: 0.526
Crowe-McAuliffe C, Murina V, Turnbull KJ, Huch S, Kasari M, Takada H, Nersisyan L, Sundsfjord A, Hegstad K, Atkinson GC, Pelechano V, Wilson DN, Hauryliuk V
Nat Commun (2022) 13 pp. 1860-1860 [ Pubmed: 35387982 DOI: doi:10.1038/s41467-022-29274-9 ]
- Trna-fmet (24 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- 1,4-diaminobutane (88 Da, Ligand)
- 70s ribosome from e. faecalis with p-trna (initiation complex), state iv. (Complex from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- 23s rrna (944 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- Spectinomycin (332 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
- 16s rrna (504 kDa, RNA from Enterococcus faecalis)
- Mrna (6 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)