Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6sw9
Q-score: 0.337
Coureux PD, Lazennec-Schurdevin C, Bourcier S, Mechulam Y, Schmitt E
Commun Biol (2020) 3 pp. 58-58 [ Pubmed: 32029867 DOI: doi:10.1038/s42003-020-0780-0 ]
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Mrna (6 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunit gamma (45 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Ribosome (Complex from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunits alpha, beta and gamma (Complex from Saccharolobus solfataricus P2)
- Archaeal translation initiation complex devoid of aif1 - ic2a state (1 MDa, Complex)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
- Translation initiation factor 1a (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Water (18 Da, Ligand)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Methionine (149 Da, Ligand)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunit alpha (28 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Trna (Complex from Escherichia coli)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Mrna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Magnesium ion (24 Da, Ligand)
- Translation initiation factor 2 subunit beta (14 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- 16s ribosomal rna (487 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6swd
Q-score: 0.526
Coureux PD, Lazennec-Schurdevin C, Bourcier S, Mechulam Y, Schmitt E
Commun Biol (2020) 3 pp. 58-58 [ Pubmed: 32029867 DOI: doi:10.1038/s42003-020-0780-0 ]
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Mrna (6 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Archaeal translation initiation complex devoid of aif1 - ic2 body (1 MDa, Complex)
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 16s ribosomal rna (340 kDa, RNA from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein al41 (4 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Water (18 Da, Ligand)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Mrna (Complex from Pyrococcus abyssi GE5)
- Ribosome (Complex from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Magnesium ion (24 Da, Ligand)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6swe
Q-score: 0.51
Coureux PD, Lazennec-Schurdevin C, Bourcier S, Mechulam Y, Schmitt E
Commun Biol (2020) 3 pp. 58-58 [ Pubmed: 32029867 DOI: doi:10.1038/s42003-020-0780-0 ]
- Initiator met-trna fmet from e. coli (a1u72 variant) (5 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Zinc ion (65 Da, Ligand)
- Translation initiation factor 1a (Complex from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Water (18 Da, Ligand)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Initiator met-trna fmet from e. coli (a1u72 variant) (Complex from Escherichia coli)
- Archaeal translation initiation complex devoid of aif1 - ic2 head (1 MDa, Complex)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 16s ribosomal rna (152 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s (Complex from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Resolution: 5.34 Å
EM Method: Single-particle
Fitted PDBs: 5jbh
Q-score: 0.117
Coureux PD, Lazennec-Schurdevin C, Monestier A, Larquet E, Cladiere L, Klaholz BP, Schmitt E, Mechulam Y
Nat Commun (2016) 7 pp. 13366-13366 [ DOI: doi:10.1038/ncomms13366 Pubmed: 27819266 ]
- Aif2-beta (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (Complex from Pyrococcus)
- 30s ribosomal protein us15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- 16s ribosomal rna (492 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein us8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein us9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein el41 (3 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es4 (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- Aif1a (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es28 (8 kDa, Protein from Pyrococcus abyssi GE5)
- Aif1 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us3 (22 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (8 kDa, RNA from Pyrococcus)
- 30s ribosomal protein us12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es6 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us14 (6 kDa, Protein from Pyrococcus abyssi GE5)
- Aif2-gamma (45 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- 30s ribosomal protein es27 (5 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es27 (6 kDa, Protein from Pyrococcus abyssi GE5)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s archaeal translation initiation complex (Complex from Escherichia coli)
- 30s ribosomal protein us19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein sx (4 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein ul30 (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es17 (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (982 kDa, Complex)
- 30s ribosomal protein us7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es19 (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- Aif2-alpha (30 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s archaeal translation initiation complex (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein es24 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us13 (16 kDa, Protein from Pyrococcus abyssi GE5)
Resolution: 5.34 Å
EM Method: Single-particle
Fitted PDBs: 5jb3
Q-score: 0.164
Coureux PD, Lazennec-Schurdevin C, Monestier A, Larquet E, Cladiere L, Klaholz BP, Schmitt E, Mechulam Y
Nat Commun (2016) 7 pp. 13366-13366 [ DOI: doi:10.1038/ncomms13366 Pubmed: 27819266 ]
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 2 subunit alpha (30 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein el41 (3 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 2 subunit gamma (45 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- Translation initiation factor 2 subunit beta (15 kDa, Protein from Pyrococcus abyssi GE5)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 16s ribosomal rna (493 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein sx (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (982 kDa, Complex)
- Mrna (8 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17p (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- Protein translation factor sui1 homolog (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (6 kDa, Protein from Pyrococcus abyssi GE5)