Structure of CD4 mimetic BNM-III-170 in complex with BG505 SOSIP.664 HIV-1 Env trimer and 17b Fab
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7lo6
Q-score: 0.456
Jette CA, Barnes CO, Kirk SM, Melillo B, Smith III AB, Bjorkman PJ
Nat Commun (2021) 12 pp. 1950-1950 [ DOI: doi:10.1038/s41467-021-21816-x Pubmed: 33782388 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- ~{n}'-[(1~{r},2~{r})-2-(carbamimidamidomethyl)-5-(methylaminomethyl)-2,3-dihydro-1~{h}-inden-1-yl]-~{n}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide (446 Da, Ligand)
- Envelope glycoprotein bg505 sosip.664 gp120 (53 kDa, Protein from Human immunodeficiency virus 1)
- Hiv-1 envelope glycoprotein bg505 sosip.664 gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- 17b fab light chain (23 kDa, Protein from Homo sapiens)
- Bg505 sosip.664 hiv-1 env trimer (Complex from Human immunodeficiency virus 1)
- 17b fab heavy chain (25 kDa, Protein from Homo sapiens)
- Complex of bg505 sosip.664 env with cd4 mimetic bnm-iii-170 and 17b fab (Complex)
- 17b fab (Complex from Homo sapiens)
Structure of CD4 mimetic M48U1 in complex with BG505 SOSIP.664 HIV-1 Env trimer and 17b Fab
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7lok
Q-score: 0.45
Jette CA, Barnes CO, Kirk SM, Melillo B, Smith III AB, Bjorkman PJ
Nat Commun (2021) 12 pp. 1950-1950 [ DOI: doi:10.1038/s41467-021-21816-x Pubmed: 33782388 ]
- Bg505 sosip.664 env (Complex from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 17b antibody fab (Complex from Homo sapiens)
- Envelope glycoprotein bg505 sosip.664 gp120 (53 kDa, Protein from Human immunodeficiency virus 1)
- M48u1 (3 kDa, Protein from Leiurus quinquestriatus hebraeus)
- 17b fab light chain (23 kDa, Protein from Homo sapiens)
- 17b fab heavy chain (25 kDa, Protein from Homo sapiens)
- Envelope glycoprotein bg505 sosip.664 gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Human immunodeficiency virus 1 (Complex)
- M48u1 (Complex from Leiurus quinquestriatus hebraeus)
BG505 SOSIP in complex with sCD4, 17b, 8ANC195
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 6cm3
Q-score: 0.465
Wang H, Barnes CO, Yang Z, Nussenzweig MC, Bjorkman PJ
Cell Host Microbe (2018) 24 pp. 579-592.e4 [ DOI: doi:10.1016/j.chom.2018.09.003 Pubmed: 30308160 ]
- Bg505 sosip in complex with scd4, 17b, 8anc195 (Complex from Human immunodeficiency virus 1)
- Envelope glycoprotein gp160 (54 kDa, Protein from Human immunodeficiency virus 1)
- Envelope glycoprotein gp160 (17 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- T-cell surface glycoprotein cd4 (21 kDa, Protein from Homo sapiens)
- 8anc195 fab heavy chain (26 kDa, Protein from Homo sapiens)
- 17b fab heavy chain (24 kDa, Protein from Homo sapiens)
- 8anc195 fab light chain (23 kDa, Protein from Homo sapiens)
- 17b fab light chain (23 kDa, Protein from Homo sapiens)