Structure of CD4 mimetic BNM-III-170 in complex with BG505 SOSIP.664 HIV-1 Env trimer and 17b Fab
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7lo6
Q-score: 0.456
Jette CA, Barnes CO, Kirk SM, Melillo B, Smith III AB, Bjorkman PJ
Nat Commun (2021) 12 pp. 1950-1950 [ Pubmed: 33782388 DOI: doi:10.1038/s41467-021-21816-x ]
- Hiv-1 envelope glycoprotein bg505 sosip.664 gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Envelope glycoprotein bg505 sosip.664 gp120 (53 kDa, Protein from Human immunodeficiency virus 1)
- 17b fab heavy chain (25 kDa, Protein from Homo sapiens)
- Bg505 sosip.664 hiv-1 env trimer (Complex from Human immunodeficiency virus 1)
- 17b fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- ~{n}'-[(1~{r},2~{r})-2-(carbamimidamidomethyl)-5-(methylaminomethyl)-2,3-dihydro-1~{h}-inden-1-yl]-~{n}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide (446 Da, Ligand)
- 17b fab (Complex from Homo sapiens)
- Complex of bg505 sosip.664 env with cd4 mimetic bnm-iii-170 and 17b fab (Complex)
Structure of CD4 mimetic M48U1 in complex with BG505 SOSIP.664 HIV-1 Env trimer and 17b Fab
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7lok
Q-score: 0.45
Jette CA, Barnes CO, Kirk SM, Melillo B, Smith III AB, Bjorkman PJ
Nat Commun (2021) 12 pp. 1950-1950 [ DOI: doi:10.1038/s41467-021-21816-x Pubmed: 33782388 ]
- Envelope glycoprotein bg505 sosip.664 gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- 17b fab light chain (23 kDa, Protein from Homo sapiens)
- 17b fab heavy chain (25 kDa, Protein from Homo sapiens)
- M48u1 (Complex from Leiurus quinquestriatus hebraeus)
- Bg505 sosip.664 env (Complex from Human immunodeficiency virus 1)
- Human immunodeficiency virus 1 (Complex)
- M48u1 (3 kDa, Protein from Leiurus quinquestriatus hebraeus)
- 17b antibody fab (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Envelope glycoprotein bg505 sosip.664 gp120 (53 kDa, Protein from Human immunodeficiency virus 1)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5vn3
Q-score: 0.416
Ozorowski G, Pallesen J, de Val N, Lyumkis D, Cottrell CA, Torres JL, Copps J, Stanfield RL, Cupo A, Pugach P, Moore JP, Wilson IA, Ward AB
Nature (2017) 547 pp. 360-363 [ DOI: doi:10.1038/nature23010 Pubmed: 28700571 ]
- Envelope glycoprotein gp160 (57 kDa, Protein from Human immunodeficiency virus 1)
- 17b fab heavy chain (24 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp160 (17 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- T-cell surface glycoprotein cd4 (20 kDa, Protein from Homo sapiens)
- Cd4 (2-domain) (Complex from Homo sapiens)
- Hiv-1 env b41 sosip.664 (Complex from Human immunodeficiency virus 1)
- 17b fragment antigen (Complex from Homo sapiens)
- Hiv-1 env b41 sosip.664 in complex with soluble cd4 (2-domain) and 17b fragment antigen binding (630 kDa, Complex)
- 17b fab light chain (23 kDa, Protein from Homo sapiens)