Cryo-EM structure of the human 40S ribosome with LARP1
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8xp2
Q-score: 0.462
Saba JA, Huang Z, Schole KL, Ye X, Bhatt SD, Li Y, Timp W, Cheng J, Green R
EMBO J (2024) 43 pp. 6555-6572 [ Pubmed: 39533057 DOI: doi:10.1038/s44318-024-00294-z ]
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- Larp1-40s ribosome (Complex from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- La-related protein 1 (123 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 18s rrna (602 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8xp3
Q-score: 0.413
Saba JA, Huang Z, Schole KL, Ye X, Bhatt SD, Li Y, Timp W, Cheng J, Green R
EMBO J (2024) 43 pp. 6555-6572 [ DOI: doi:10.1038/s44318-024-00294-z Pubmed: 39533057 ]
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Leucine-rich repeat-containing protein 47 (63 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 18s rrna (602 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- La-related protein 1 (123 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- Larp1-lrrc47-40s ribosome (Complex from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 8g4i
Q-score: 0.544
Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS
Structure (2024) 32 pp. 400-410.e4 [ DOI: doi:10.1016/j.str.2023.12.015 Pubmed: 38242118 ]
- Ribosomal protein s2 (26 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s16 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s8 (19 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s20 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s3 (24 kDa, Protein from Giardia intestinalis assemblage A)
- Zinc ion (65 Da, Ligand)
- Water (18 Da, Ligand)
- Ribosomal protein s10b (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s9 (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s14 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s28 (7 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s26 (12 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s8p (fragment) (14 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s6 (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s19e (fragment) (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s12p (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s7 (23 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s4 (30 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s15 (16 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s29a (15 kDa, Protein from Giardia intestinalis assemblage A)
- Emetine (480 Da, Ligand)
- Ribosomal protein s18 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 18s rrna (470 kDa, RNA from Giardia intestinalis assemblage A)
- Trna (23 kDa, RNA from Giardia intestinalis assemblage A)
- 40s ribosomal protein s3a (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s12 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s7p (fragment) (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s17 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s13 (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s24 (14 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal subunit of the 80s giardia intestinalis assemblage a ribosome with emetine bound in v1 conformation (Complex from Giardia intestinalis assemblage A)
- 40s ribosomal protein s21 (9 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27a (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s30 (7 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein sa (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s17p (23 kDa, Protein from Giardia intestinalis assemblage A)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s25 (10 kDa, Protein from Giardia intestinalis assemblage A)
The structure of human Pdcd4 bound to the 40S small ribosomal subunit
Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Du Y, Albacete-Albacete L, Ramakrishnan V, Fraser CS
Nat Commun (2024) 15 pp. 6633-6633 [ DOI: doi:10.1038/s41467-024-50672-8 Pubmed: 39117603 ]
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Spermidine (145 Da, Ligand)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es30 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Programmed cell death protein 4 (51 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
- 18s rrna (555 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosome bound to pdcd4 (1 MDa, Complex from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
Structure of human eIF3 core from closed 48S translation initiation complex
Petrychenko V, Yi SH, Liedtke D, Peng BZ, Rodnina MV, Fischer N
Nat Struct Mol Biol (2025) 32 pp. 62-72 [ DOI: doi:10.1038/s41594-024-01378-4 Pubmed: 39289545 ]
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit h (39 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit l (66 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit a (166 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit e (52 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Homo sapiens)
- Mrna (Complex from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Homo sapiens)
- Mrna (82 kDa, RNA from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- Human 48s initiation complex 40s-eif1-eif1a-eif2-eif3-trna-met (Complex from Homo sapiens)
- Human 48s initiation complex 40s-eif1-eif1a-eif2-eif3-trna-met-mrna (Complex)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Homo sapiens)
Cryo-EM structure of the human 40S ribosome with PDCD4
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8xxl
Q-score: 0.538
Ye X, Huang Z, Li Y, Wang M, Meng W, Miao M, Cheng J
Cell Res (2024) 34 pp. 522-525 [ DOI: doi:10.1038/s41422-024-00962-z Pubmed: 38641729 ]
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- Programmed cell death protein 4 (51 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- 40s ribosome with pdcd4 (Complex from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 18s rrna (602 kDa, RNA from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8xxm
Q-score: 0.491
Ye X, Huang Z, Li Y, Wang M, Meng W, Miao M, Cheng J
Cell Res (2024) 34 pp. 522-525 [ DOI: doi:10.1038/s41422-024-00962-z Pubmed: 38641729 ]
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- Programmed cell death protein 4 (51 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosome with pdcd4 and eif4g (Complex from Homo sapiens)
- 18s rrna (602 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit g (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
Atomic structure of wheat ribosome reveals unique features of the plant ribosomes
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 8jiw
Q-score: 0.481
Mishra RK, Sharma P, Khaja FT, Uday AB, Hussain T
Structure (2024) 32 pp. 562- [ Pubmed: 38458197 DOI: doi:10.1016/j.str.2024.02.006 ]
- 40s ribosomal protein s8 (25 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s15 (17 kDa, Protein from Triticum aestivum)
- Ribosomal protein s13/s15 n-terminal domain-containing protein (17 kDa, Protein from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s25 (10 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s6 (28 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s30 (6 kDa, Protein from Triticum aestivum)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s4 (30 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s11 n-terminal domain-containing protein (18 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s21 (9 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s14 (16 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s16 (16 kDa, Protein from Triticum aestivum)
- 18s rrna (584 kDa, RNA from Triticum aestivum)
- Kh type-2 domain-containing protein (25 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s23 (15 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s19 (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein sa (32 kDa, Protein from Triticum aestivum)
- S5 drbm domain-containing protein (30 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s3a (30 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s17 (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s26 (15 kDa, Protein from Triticum aestivum)
- 30s ribosomal protein s8, chloroplastic (14 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s29 (6 kDa, Protein from Triticum aestivum)
- Ribosomal protein s7 domain-containing protein (22 kDa, Protein from Triticum aestivum)
- 30s ribosomal protein s4, chloroplastic (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s28 (7 kDa, Protein from Triticum aestivum)
- Ribosomal protein s10 domain-containing protein (13 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s18 (17 kDa, Protein from Triticum aestivum)
- Mitogen-activated protein kinase (36 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s27 (9 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s7 (22 kDa, Protein from Triticum aestivum)
- The large subunit of wheat ribosome (Complex from Triticum aestivum)
- 60s ribosomal protein l41 (3 kDa, Protein from Triticum aestivum)
- Plectin/s10 n-terminal domain-containing protein (20 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s24 (15 kDa, Protein from Triticum aestivum)
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8g4s
Q-score: 0.51
Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS
Structure (2024) 32 pp. 400- [ DOI: doi:10.1016/j.str.2023.12.015 Pubmed: 38242118 ]
- 40s ribosomal protein s8 (19 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s26 (12 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s16 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s3a (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s3 (24 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s17p (23 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s19e (fragment) (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s10b (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s13 (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s8p (fragment) (14 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s7 (23 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s9 (21 kDa, Protein from Giardia intestinalis assemblage A)
- Emetine (480 Da, Ligand)
- 40s ribosomal subunit of the 80s giardia intestinalis assemblage a ribosome with emetine bound in v1 conformation (Complex from Giardia intestinalis assemblage A)
- Ribosomal protein s20 (14 kDa, Protein from Giardia intestinalis assemblage A)
- P-site trna (24 kDa, RNA from Giardia intestinalis assemblage A)
- 40s ribosomal protein s25 (10 kDa, Protein from Giardia intestinalis assemblage A)
- A-site trna (24 kDa, RNA from Giardia intestinalis assemblage A)
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein s17 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s7p (fragment) (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s12p (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s14 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s28 (7 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s15 (16 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s2 (26 kDa, Protein from Giardia intestinalis assemblage A)
- E-site trna (23 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s27a (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s21 (9 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s6 (28 kDa, Protein from Giardia intestinalis assemblage A)
- 18s rrna (470 kDa, RNA from Giardia intestinalis assemblage A)
- 40s ribosomal protein s4 (30 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s12 (14 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein sa (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s18 (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s24 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s29a (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s30 (7 kDa, Protein from Giardia intestinalis assemblage A)
- Mrna (2 kDa, RNA from Giardia intestinalis assemblage A)
40S subunit of the Giardia lamblia 80S ribosome
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8fvy
Q-score: 0.51
Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS
Structure (2024) 32 pp. 400- [ DOI: doi:10.1016/j.str.2023.12.015 Pubmed: 38242118 ]
- Ribosomal protein s2 (26 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s16 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s8 (19 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s20 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s3 (24 kDa, Protein from Giardia intestinalis assemblage A)
- Zinc ion (65 Da, Ligand)
- Water (18 Da, Ligand)
- Ribosomal protein s10b (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s9 (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s14 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s28 (7 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s26 (12 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s8p (fragment) (14 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s6 (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s19e (fragment) (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s12p (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s7 (23 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s4 (30 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s15 (16 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s29a (15 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal subunit of the 80s giardia intestinalis assemblage a ribosome (Complex from Giardia intestinalis assemblage A)
- Emetine (480 Da, Ligand)
- Ribosomal protein s18 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 18s rrna (470 kDa, RNA from Giardia intestinalis assemblage A)
- Trna (23 kDa, RNA from Giardia intestinalis assemblage A)
- 40s ribosomal protein s3a (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s12 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s7p (fragment) (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s17 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s13 (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s24 (14 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s21 (9 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27a (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s30 (7 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein sa (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s17p (23 kDa, Protein from Giardia intestinalis assemblage A)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s25 (10 kDa, Protein from Giardia intestinalis assemblage A)