Cryo-EM structure of the human 40S ribosome with LARP1
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8xp2
Q-score: 0.462
Saba JA, Huang Z, Schole KL, Ye X, Bhatt SD, Li Y, Timp W, Cheng J, Green R
EMBO J (2024) 43 pp. 6555-6572 [ Pubmed: 39533057 DOI: doi:10.1038/s44318-024-00294-z ]
- 18s rrna (602 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- Larp1-40s ribosome (Complex from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- La-related protein 1 (123 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8xp3
Q-score: 0.413
Saba JA, Huang Z, Schole KL, Ye X, Bhatt SD, Li Y, Timp W, Cheng J, Green R
EMBO J (2024) 43 pp. 6555-6572 [ Pubmed: 39533057 DOI: doi:10.1038/s44318-024-00294-z ]
- 18s rrna (602 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- Larp1-lrrc47-40s ribosome (Complex from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Leucine-rich repeat-containing protein 47 (63 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- La-related protein 1 (123 kDa, Protein from Homo sapiens)
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 8g4i
Q-score: 0.544
Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS
Structure (2024) 32 pp. 400-410.e4 [ Pubmed: 38242118 DOI: doi:10.1016/j.str.2023.12.015 ]
- 40s ribosomal protein s26 (12 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s8 (19 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s13 (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s12p (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s7 (23 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s17 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s3 (24 kDa, Protein from Giardia intestinalis assemblage A)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s3a (28 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s4 (30 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s18 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s25 (10 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s21 (9 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s19e (fragment) (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s24 (14 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal subunit of the 80s giardia intestinalis assemblage a ribosome with emetine bound in v1 conformation (Complex from Giardia intestinalis assemblage A)
- Ribosomal protein s28 (7 kDa, Protein from Giardia intestinalis assemblage A)
- Water (18 Da, Ligand)
- Ribosomal protein s15 (16 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s10b (15 kDa, Protein from Giardia intestinalis assemblage A)
- 18s rrna (470 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s2 (26 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s20 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s16 (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s8p (fragment) (14 kDa, Protein from Giardia intestinalis assemblage A)
- Emetine (480 Da, Ligand)
- 40s ribosomal protein s6 (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s7p (fragment) (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s17p (23 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27a (15 kDa, Protein from Giardia intestinalis assemblage A)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein s14 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Trna (23 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s12 (14 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s30 (7 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s9 (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s29a (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein sa (28 kDa, Protein from Giardia intestinalis assemblage A)
The structure of human Pdcd4 bound to the 40S small ribosomal subunit
Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Du Y, Albacete-Albacete L, Ramakrishnan V, Fraser CS
Nat Commun (2024) 15 pp. 6633-6633 [ Pubmed: 39117603 DOI: doi:10.1038/s41467-024-50672-8 ]
- Spermidine (145 Da, Ligand)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein es30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- Programmed cell death protein 4 (51 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 18s rrna (555 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosome bound to pdcd4 (1 MDa, Complex from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
Structure of human eIF3 core from closed 48S translation initiation complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8rg0
Q-score: 0.303
Petrychenko V, Yi SH, Liedtke D, Peng BZ, Rodnina MV, Fischer N
Nat Struct Mol Biol (2025) 32 pp. 62-72 [ DOI: doi:10.1038/s41594-024-01378-4 Pubmed: 39289545 ]
- Human 48s initiation complex 40s-eif1-eif1a-eif2-eif3-trna-met-mrna (Complex)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Mrna (82 kDa, RNA from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit l (66 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit h (39 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit a (166 kDa, Protein from Homo sapiens)
- Mrna (Complex from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit e (52 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Homo sapiens)
- Human 48s initiation complex 40s-eif1-eif1a-eif2-eif3-trna-met (Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human 40S ribosome with PDCD4
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8xxl
Q-score: 0.538
Ye X, Huang Z, Li Y, Wang M, Meng W, Miao M, Cheng J
Cell Res (2024) 34 pp. 522-525 [ Pubmed: 38641729 DOI: doi:10.1038/s41422-024-00962-z ]
- 40s ribosome with pdcd4 (Complex from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Programmed cell death protein 4 (51 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 18s rrna (602 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8xxm
Q-score: 0.491
Ye X, Huang Z, Li Y, Wang M, Meng W, Miao M, Cheng J
Cell Res (2024) 34 pp. 522-525 [ Pubmed: 38641729 DOI: doi:10.1038/s41422-024-00962-z ]
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Programmed cell death protein 4 (51 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 18s rrna (602 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit g (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosome with pdcd4 and eif4g (Complex from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
Atomic structure of wheat ribosome reveals unique features of the plant ribosomes
Mishra RK, Sharma P, Khaja FT, Uday AB, Hussain T
Structure (2024) 32 pp. 562- [ Pubmed: 38458197 DOI: doi:10.1016/j.str.2024.02.006 ]
- 40s ribosomal protein s4 (30 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s8 (25 kDa, Protein from Triticum aestivum)
- Plectin/s10 n-terminal domain-containing protein (20 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- Kh type-2 domain-containing protein (25 kDa, Protein from Triticum aestivum)
- 18s rrna (584 kDa, RNA from Triticum aestivum)
- 40s ribosomal protein sa (32 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l41 (3 kDa, Protein from Triticum aestivum)
- The large subunit of wheat ribosome (Complex from Triticum aestivum)
- 40s ribosomal protein s7 (22 kDa, Protein from Triticum aestivum)
- 30s ribosomal protein s8, chloroplastic (14 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s15 (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s25 (10 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s16 (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s17 (16 kDa, Protein from Triticum aestivum)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s26 (15 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s30 (6 kDa, Protein from Triticum aestivum)
- Ribosomal protein s7 domain-containing protein (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s6 (28 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s24 (15 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s18 (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s14 (16 kDa, Protein from Triticum aestivum)
- 30s ribosomal protein s4, chloroplastic (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s19 (17 kDa, Protein from Triticum aestivum)
- Ribosomal protein s10 domain-containing protein (13 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s27 (9 kDa, Protein from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s21 (9 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s29 (6 kDa, Protein from Triticum aestivum)
- Ribosomal protein s13/s15 n-terminal domain-containing protein (17 kDa, Protein from Triticum aestivum)
- S5 drbm domain-containing protein (30 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s3a (30 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s11 n-terminal domain-containing protein (18 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s28 (7 kDa, Protein from Triticum aestivum)
- Mitogen-activated protein kinase (36 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s23 (15 kDa, Protein from Triticum aestivum)
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8g4s
Q-score: 0.51
Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS
Structure (2024) 32 pp. 400- [ Pubmed: 38242118 DOI: doi:10.1016/j.str.2023.12.015 ]
- 40s ribosomal protein s26 (12 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s8 (19 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s13 (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s12p (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s7 (23 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s17 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s3 (24 kDa, Protein from Giardia intestinalis assemblage A)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s3a (28 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s4 (30 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s18 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s25 (10 kDa, Protein from Giardia intestinalis assemblage A)
- A-site trna (24 kDa, RNA from Giardia intestinalis assemblage A)
- 40s ribosomal protein s21 (9 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s19e (fragment) (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s24 (14 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal subunit of the 80s giardia intestinalis assemblage a ribosome with emetine bound in v1 conformation (Complex from Giardia intestinalis assemblage A)
- Mrna (2 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s28 (7 kDa, Protein from Giardia intestinalis assemblage A)
- Water (18 Da, Ligand)
- Ribosomal protein s15 (16 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s10b (15 kDa, Protein from Giardia intestinalis assemblage A)
- 18s rrna (470 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s2 (26 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s20 (14 kDa, Protein from Giardia intestinalis assemblage A)
- P-site trna (24 kDa, RNA from Giardia intestinalis assemblage A)
- E-site trna (23 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s16 (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s8p (fragment) (14 kDa, Protein from Giardia intestinalis assemblage A)
- Emetine (480 Da, Ligand)
- 40s ribosomal protein s6 (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s7p (fragment) (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s17p (23 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27a (15 kDa, Protein from Giardia intestinalis assemblage A)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein s14 (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s30 (7 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s12 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s9 (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s29a (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein sa (28 kDa, Protein from Giardia intestinalis assemblage A)
40S subunit of the Giardia lamblia 80S ribosome
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8fvy
Q-score: 0.51
Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS
Structure (2024) 32 pp. 400- [ Pubmed: 38242118 DOI: doi:10.1016/j.str.2023.12.015 ]
- 40s ribosomal protein s26 (12 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s8 (19 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s13 (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s12p (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s7 (23 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s17 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s3 (24 kDa, Protein from Giardia intestinalis assemblage A)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s3a (28 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s4 (30 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s18 (17 kDa, Protein from Giardia intestinalis assemblage A)
- 60s ribosomal subunit of the 80s giardia intestinalis assemblage a ribosome (Complex from Giardia intestinalis assemblage A)
- 40s ribosomal protein s25 (10 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s21 (9 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s19e (fragment) (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s24 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s28 (7 kDa, Protein from Giardia intestinalis assemblage A)
- Water (18 Da, Ligand)
- Ribosomal protein s15 (16 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s10b (15 kDa, Protein from Giardia intestinalis assemblage A)
- 18s rrna (470 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s2 (26 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s20 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s16 (17 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s8p (fragment) (14 kDa, Protein from Giardia intestinalis assemblage A)
- Emetine (480 Da, Ligand)
- 40s ribosomal protein s6 (28 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s7p (fragment) (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ssu ribosomal protein s17p (23 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27a (15 kDa, Protein from Giardia intestinalis assemblage A)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein s14 (15 kDa, Protein from Giardia intestinalis assemblage A)
- Trna (23 kDa, RNA from Giardia intestinalis assemblage A)
- Ribosomal protein s12 (14 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein s30 (7 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s27 (14 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s9 (21 kDa, Protein from Giardia intestinalis assemblage A)
- Ribosomal protein s29a (15 kDa, Protein from Giardia intestinalis assemblage A)
- 40s ribosomal protein sa (28 kDa, Protein from Giardia intestinalis assemblage A)