State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8xu8
Q-score: 0.414
Cheng J, Wu CL, Li JX, Yang Q, Zhao MJ, Zhang XZ
To Be Published
- 5s rrna (38 kDa, RNA from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es28a (7 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el29 (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el30 (10 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el36a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us7 (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el37a (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es26a (10 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us9a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein rack1 (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us8a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul6a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us14a (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el6b (19 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul2a (27 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us12a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el33a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es12 (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul16 (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul14a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul3 (43 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el42a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el19a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Trna (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el34a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us17a (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul13a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el40a (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul23 (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul15 (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es17a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es10a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast 80s ribosome with compact eef2 and trnas (Complex from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us4a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul18 (33 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el18a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es25a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us19 (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us15 (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul5b (19 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul22a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es27a (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el21a (18 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us11b (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el31a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el8a (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul4a (39 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es6a (26 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es7a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us13a (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es21a (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el38 (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el14a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el22a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es19a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul30a (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us3 (24 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es24a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us5 (23 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el27a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el41a (3 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul24a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Elongation factor 2 (93 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es1a (26 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es31 (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el13a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us2a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el20a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es4a (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- 18s rrna (579 kDa, RNA from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es8a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el43a (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el15a (24 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el24a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein ul29a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es30a (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- Large ribosomal subunit protein el32 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8oo0
Q-score: 0.494
Klein MA, Wild K, Kisonaite M, Sinning I
Nat Commun (2024) 15 pp. 716-716 [ DOI: doi:10.1038/s41467-024-44862-7 Pubmed: 38267453 ]
- 60s ribosomal protein l41-a (3 kDa, Protein from Thermochaetoides thermophila)
- 5.8s rrna (50 kDa, RNA from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein l37 (10 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s29 (6 kDa, Protein from Thermochaetoides thermophila)
- Putative ribosomal protein (17 kDa, Protein from Thermochaetoides thermophila)
- Ribosome-associated molecular chaperone ssb1 (67 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l38 (9 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s9-like protein (22 kDa, Protein from Thermochaetoides thermophila)
- Ribosomal protein l18e/l15p domain-containing protein (16 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s22-like protein (14 kDa, Protein from Thermochaetoides thermophila)
- Ubiquitin-like domain-containing protein (14 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s27a-like protein (17 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l9-like protein (21 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l39 (6 kDa, Protein from Thermochaetoides thermophila)
- 60s acidic ribosomal protein p0 (33 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s0 (31 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s14-like protein (16 kDa, Protein from Thermochaetoides thermophila)
- 28s rrna (1 MDa, RNA from Thermochaetoides thermophila)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (14 kDa, Protein from Thermochaetoides thermophila)
- Putative 60s ribosomal protein (13 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s28-like protein (7 kDa, Protein from Thermochaetoides thermophila)
- Putative 60s ribosomal protein (15 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l29 (7 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s1 (29 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Thermochaetoides thermophila)
- 18s rrna (578 kDa, RNA from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s26 (13 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s8 (23 kDa, Protein from Thermochaetoides thermophila)
- Ribosomal protein s27-like protein (8 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l36 (12 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Thermochaetoides thermophila)
- Methionine aminopeptidase 2 (41 kDa, Protein from Thermochaetoides thermophila)
- Putative ribosomal protein (20 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s10-like protein (18 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s23-like protein (15 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l30-like protein (11 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s13-like protein (16 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l17-like protein (20 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s17-like protein (16 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s16-like protein (15 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s12 (15 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s2-like protein (28 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l20 (20 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s25 (10 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s24 (15 kDa, Protein from Thermochaetoides thermophila)
- Map2 autoproteolysis product in complex with the 80s ribosome (Complex from Thermochaetoides thermophila)
- 40s ribosomal protein s19-like protein (17 kDa, Protein from Thermochaetoides thermophila)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s30 (6 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s6 (27 kDa, Protein from Thermochaetoides thermophila)
- Ribosomal protein l18-like protein (24 kDa, Protein from Thermochaetoides thermophila)
- 5s rrna (38 kDa, RNA from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l16-like protein (23 kDa, Protein from Thermochaetoides thermophila)
- Ribosomal protein l34-like protein (13 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l10-like protein (25 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s20-like protein (13 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l44-like protein (12 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l27 (15 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s7 (23 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s3-like protein (27 kDa, Protein from Thermochaetoides thermophila)
- Putative guanine nucleotide-binding protein (35 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s5-like protein (23 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s4 (29 kDa, Protein from Thermochaetoides thermophila)
- Ribosomal protein l19 (22 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l5-like protein (35 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l6 (22 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l22-like protein (14 kDa, Protein from Thermochaetoides thermophila)
- Hyaluronan/mrna-binding protein domain-containing protein (32 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l8 (29 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l43-like protein (10 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s11-like protein (18 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l2-like protein (27 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l13 (24 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l24 (18 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s21-like protein (10 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s15-like protein (17 kDa, Protein from Thermochaetoides thermophila)
- Ribosomal protein l15 (24 kDa, Protein from Thermochaetoides thermophila)
Thermophilic eukaryotic 80S ribosome at idle POST state
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7olc
Q-score: 0.538
Kisonaite M, Wild K, Lapouge K, Ruppert T, Sinning I
Nat Commun (2022) 13 pp. 476-476 [ DOI: doi:10.1038/s41467-022-27967-9 Pubmed: 35079002 ]
- 60s ribosomal protein l29 (7 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l34-like protein (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 5s rrna (38 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative 60s ribosomal protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s22-like protein (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s16-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s0 (31 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s4 (29 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein l19 (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative guanine nucleotide-binding protein (35 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Habp4_pai-rbp1 domain-containing protein (32 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s9-like protein (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s15-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l10-like protein (25 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s25 (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s30 (6 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s20-like protein (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l28-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l44-like protein (12 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s21-like protein (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ubiquitin (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 26s rrna (1 MDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- El39 (6 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative ribosomal protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l16-like protein (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative 60s ribosomal protein (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s14-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s acidic ribosomal protein p0 (33 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s8 (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l38-like protein (9 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l9-like protein (21 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s7 (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s1 (29 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s28-like protein (7 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s3-like protein (27 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosome-associated molecular chaperone ssb1 (67 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l27 (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s10-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l41-a (3 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative ribosomal protein (20 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Us14 (6 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s13-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s17-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Water (18 Da, Ligand)
- 60s ribosomal protein l2-like protein (27 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s6 (27 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s23-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l30-like protein (11 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l24-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l43-like protein (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Chaetomium thermophilum 80s ribosome (Cell from Chaetomium thermophilum var. thermophilum DSM 1495)
- 18s rrna (578 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s19-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l22-like protein (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s27a-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s26 (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s12 (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 5.8s rrna (50 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s5-like protein (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s2-like protein (28 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein s27-like protein (8 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s11-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l5-like protein (35 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7old
Q-score: 0.458
Kisonaite M, Wild K, Lapouge K, Ruppert T, Sinning I
Nat Commun (2022) 13 pp. 476-476 [ DOI: doi:10.1038/s41467-022-27967-9 Pubmed: 35079002 ]
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s0 (31 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s16-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s12 (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s21-like protein (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative 60s ribosomal protein (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s28-like protein (7 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s4 (29 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l5-like protein (35 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s10-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l10-like protein (25 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s11-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s22-like protein (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l44-like protein (12 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l27 (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s7 (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l28-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Elongation factor 2 (93 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s9-like protein (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s23-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us14 (6 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l16-like protein (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l43-like protein (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s2-like protein (28 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l41-a (3 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s acidic ribosomal protein p0 (33 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s8 (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein s27-like protein (8 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l30-like protein (11 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Habp4_pai-rbp1 domain-containing protein (32 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s17-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 18s rrna (578 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l2-like protein (27 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s3-like protein (27 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 5.8s rrna (50 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l19 (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l38-like protein (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s13-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative ribosomal protein (20 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l24-like protein (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s1 (29 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s5-like protein (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 26s rrna (1 MDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l34-like protein (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s30 (6 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein el39 (6 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 5s rrna (38 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s24 (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l9-like protein (25 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l29 (7 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s20-like protein (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s15-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative ribosomal protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s26 (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s14-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ubiquitin (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s6 (27 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative guanine nucleotide-binding protein (35 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Chaetomium thermophilum 80s ribosome (Cell from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s25 (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative 60s ribosomal protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 60s ribosomal protein l22-like protein (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s27a-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Pe/e trna (24 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s19-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
Structure of the Paranosema locustae ribosome in complex with Lso2
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6zu5
Q-score: 0.557
Ehrenbolger K, Jespersen N, Sharma H, Sokolova YY, Tokarev YS, Vossbrinck CR, Barandun J
PLoS Biol (2020) 18 pp. e3000958-e3000958 [ DOI: doi:10.1371/journal.pbio.3000958 Pubmed: 33125369 ]
- El18 (20 kDa, Protein from Paranosema locustae)
- El20 (20 kDa, Protein from Paranosema locustae)
- Es4 (30 kDa, Protein from Paranosema locustae)
- Ul15 (17 kDa, Protein from Paranosema locustae)
- Ul3 (43 kDa, Protein from Paranosema locustae)
- Ul14 (15 kDa, Protein from Paranosema locustae)
- Us7 (21 kDa, Protein from Paranosema locustae)
- Es25 (13 kDa, Protein from Paranosema locustae)
- El27 (14 kDa, Protein from Paranosema locustae)
- Us14 (7 kDa, Protein from Paranosema locustae)
- Rack1 (35 kDa, Protein from Paranosema locustae)
- Us4 (21 kDa, Protein from Paranosema locustae)
- Es28 (7 kDa, Protein from Paranosema locustae)
- Es7 (20 kDa, Protein from Paranosema locustae)
- 25s rrna (854 kDa, RNA from Paranosema locustae)
- Magnesium ion (24 Da, Ligand)
- Us19 (16 kDa, Protein from Paranosema locustae)
- El29 (7 kDa, Protein from Paranosema locustae)
- Us3 (24 kDa, Protein from Paranosema locustae)
- Lso2 bound to the ribosome of paranosema locustae (Complex from Paranosema locustae)
- Ul16 (24 kDa, Protein from Paranosema locustae)
- Ul4 (37 kDa, Protein from Paranosema locustae)
- Ul23 (11 kDa, Protein from Paranosema locustae)
- El42 (13 kDa, Protein from Paranosema locustae)
- Ul6 (21 kDa, Protein from Paranosema locustae)
- Ul18 (31 kDa, Protein from Paranosema locustae)
- Us2 (27 kDa, Protein from Paranosema locustae)
- Us13 (18 kDa, Protein from Paranosema locustae)
- El31 (12 kDa, Protein from Paranosema locustae)
- Es10 (11 kDa, Protein from Paranosema locustae)
- Us10 (12 kDa, Protein from Paranosema locustae)
- Us9 (16 kDa, Protein from Paranosema locustae)
- El15 (23 kDa, Protein from Paranosema locustae)
- Es17 (14 kDa, Protein from Paranosema locustae)
- El36 (11 kDa, Protein from Paranosema locustae)
- El6 (20 kDa, Protein from Paranosema locustae)
- Us8 (14 kDa, Protein from Paranosema locustae)
- El43 (9 kDa, Protein from Paranosema locustae)
- El14 (12 kDa, Protein from Paranosema locustae)
- Es6 (25 kDa, Protein from Paranosema locustae)
- El24 (15 kDa, Protein from Paranosema locustae)
- Us11 (14 kDa, Protein from Paranosema locustae)
- Es30 (7 kDa, Protein from Paranosema locustae)
- Ul29 (15 kDa, Protein from Paranosema locustae)
- Es19 (16 kDa, Protein from Paranosema locustae)
- Ul13 (23 kDa, Protein from Paranosema locustae)
- El37 (10 kDa, Protein from Paranosema locustae)
- Us17 (18 kDa, Protein from Paranosema locustae)
- Es27 (9 kDa, Protein from Paranosema locustae)
- Us15 (16 kDa, Protein from Paranosema locustae)
- El33 (12 kDa, Protein from Paranosema locustae)
- El39 (6 kDa, Protein from Paranosema locustae)
- El19 (19 kDa, Protein from Paranosema locustae)
- Lso2 (9 kDa, Protein from Paranosema locustae)
- El30 (11 kDa, Protein from Paranosema locustae)
- Zinc ion (65 Da, Ligand)
- 18s rrna (456 kDa, RNA from Paranosema locustae)
- Ul5 (19 kDa, Protein from Paranosema locustae)
- El22 (13 kDa, Protein from Paranosema locustae)
- Es24 (15 kDa, Protein from Paranosema locustae)
- El40 (14 kDa, Protein from Paranosema locustae)
- Us5 (28 kDa, Protein from Paranosema locustae)
- El21 (18 kDa, Protein from Paranosema locustae)
- Es26 (11 kDa, Protein from Paranosema locustae)
- Us12 (15 kDa, Protein from Paranosema locustae)
- Ul22 (19 kDa, Protein from Paranosema locustae)
- Ul24 (16 kDa, Protein from Paranosema locustae)
- Es8 (20 kDa, Protein from Paranosema locustae)
- Adenosine monophosphate (347 Da, Ligand)
- El13 (19 kDa, Protein from Paranosema locustae)
- El8 (24 kDa, Protein from Paranosema locustae)
- Ul2 (26 kDa, Protein from Paranosema locustae)
- El34 (12 kDa, Protein from Paranosema locustae)
- Ul30 (30 kDa, Protein from Paranosema locustae)
- 5s rrna (38 kDa, RNA from Paranosema locustae)
- El32 (15 kDa, Protein from Paranosema locustae)
- Es21 (7 kDa, Protein from Paranosema locustae)
- Es1 (26 kDa, Protein from Paranosema locustae)