Specific features and methylation sites of a plant ribosome. 40S body ribosomal subunit.
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 7qix
Q-score: 0.648
Cottilli P, Itoh Y, Nobe Y, Petrov AS, Lison P, Taoka M, Amunts A
Plant Commun. (2022) 3 pp. 100342-100342 [ Pubmed: 35643637 DOI: doi:10.1016/j.xplc.2022.100342 ]
- 40s ribosomal protein s30 (6 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s15a-1 (14 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein sa (32 kDa, Protein from Solanum lycopersicum)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l41 (3 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s17 (16 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s27 (9 kDa, Protein from Solanum lycopersicum)
- Potassium ion (39 Da, Ligand)
- S5 drbm domain-containing protein (30 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s6 (28 kDa, Protein from Solanum lycopersicum)
- Water (18 Da, Ligand)
- 40s body ribosomal protein us12 (15 kDa, Protein from Solanum lycopersicum)
- 40s body ribosomal protein us4 (23 kDa, Protein from Solanum lycopersicum)
- Ribosomal_s17_n domain-containing protein (17 kDa, Protein from Solanum lycopersicum)
- 30s ribosomal protein s15, chloroplastic (17 kDa, Protein from Solanum lycopersicum)
- 40s body ribosomal protein es4 (29 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s7 (22 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s24 (15 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein s14 (16 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s8 (24 kDa, Protein from Solanum lycopersicum)
- 40s body ribosomal subunit (Complex from Solanum lycopersicum)
- 40s ribosomal protein s3a (29 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s26 (14 kDa, Protein from Solanum lycopersicum)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein l19 (24 kDa, Protein from Solanum lycopersicum)
- 18s rrna body (583 kDa, RNA from Solanum lycopersicum)
- 40s ribosomal protein s21 (9 kDa, Protein from Solanum lycopersicum)
Specific features and methylation sites of a plant ribosome
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 7qiy
Q-score: 0.646
Cottilli P, Itoh Y, Nobe Y, Petrov AS, Lison P, Taoka M, Amunts A
Plant Commun. (2022) 3 pp. 100342-100342 [ Pubmed: 35643637 DOI: doi:10.1016/j.xplc.2022.100342 ]
- Kh type-2 domain-containing protein (26 kDa, Protein from Solanum lycopersicum)
- 40s head ribosomal protein us13 (17 kDa, Protein from Solanum lycopersicum)
- Mrna (895 Da, RNA from Solanum lycopersicum)
- 40s head ribosomal protein us9 (16 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s17 (16 kDa, Protein from Solanum lycopersicum)
- 40s head ribosomal protein es19 (16 kDa, Protein from Solanum lycopersicum)
- Zinc ion (65 Da, Ligand)
- 40s head ribosomal subunit (Complex from Solanum lycopersicum)
- Potassium ion (39 Da, Ligand)
- Water (18 Da, Ligand)
- 1,4-diaminobutane (88 Da, Ligand)
- Beta-d-glucopyranose (180 Da, Ligand)
- 40s head ribosomal protein es28 (7 kDa, Protein from Solanum lycopersicum)
- Mitogen-activated protein kinase (35 kDa, Protein from Solanum lycopersicum)
- Magnesium ion (24 Da, Ligand)
- 40s head ribosomal protein us19 (17 kDa, Protein from Solanum lycopersicum)
- Trna (4 kDa, RNA from Solanum lycopersicum)
- Ribosomal_s10 domain-containing protein (13 kDa, Protein from Solanum lycopersicum)
- 18s rrna head (582 kDa, RNA from Solanum lycopersicum)
- 40s ribosomal protein s29 (6 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s25 (11 kDa, Protein from Solanum lycopersicum)
- S10_plectin domain-containing protein (19 kDa, Protein from Solanum lycopersicum)
- Ribosomal_s7 domain-containing protein (23 kDa, Protein from Solanum lycopersicum)