Structure of the 26S proteasome-Ubp6 complex in the si state (Core Particle and Lid)
Resolution: 6.1 Å
EM Method: Single-particle
Fitted PDBs: 7qo3
Q-score: 0.133
Hung KYS, Klumpe S, Eisele MR, Elsasser S, Tian G, Sun S, Moroco JA, Cheng TC, Joshi T, Seibel T, Van Dalen D, Feng XH, Lu Y, Ovaa H, Engen JR, Lee BH, Rudack T, Sakata E, Finley D
Nat Commun (2022) 13 pp. 838-838 [ DOI: doi:10.1038/s41467-022-28186-y Pubmed: 35149681 ]
- 26s proteasome regulatory subunit rpn10 (29 kDa, Protein from Saccharomyces cerevisiae)
- 26s proteasome regulatory subunit rpn1 (109 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-4 (22 kDa, Protein from Saccharomyces cerevisiae)
- 26s proteasome regulatory subunit rpn7 (49 kDa, Protein from Saccharomyces cerevisiae)
- 26s proteasome complex subunit sem1 (10 kDa, Protein from Saccharomyces cerevisiae)
- 26s proteasome-ubp6 complex (si state) (Complex from Saccharomyces cerevisiae)
- Proteasome subunit beta type-1 (23 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-5 (31 kDa, Protein from Saccharomyces cerevisiae)
- Probable proteasome subunit alpha type-7 (31 kDa, Protein from Saccharomyces cerevisiae)
- 26s proteasome regulatory subunit rpn8 (38 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-5 (28 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae)
- 26s proteasome regulatory subunit rpn3 (60 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-7 (29 kDa, Protein from Saccharomyces cerevisiae)
- 26s proteasome regulatory subunit rpn12 (31 kDa, Protein from Saccharomyces cerevisiae)
- Ubiquitin carboxyl-terminal hydrolase rpn11 (34 kDa, Protein from Saccharomyces cerevisiae)
- 26s proteasome regulatory subunit rpn6 (49 kDa, Protein from Saccharomyces cerevisiae)
- 26s proteasome regulatory subunit rpn2 (104 kDa, Protein from Saccharomyces cerevisiae)
- 26s proteasome regulatory subunit rpn5 (51 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-6 (26 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-2 (27 kDa, Protein from Saccharomyces cerevisiae)
- 26s proteasome regulatory subunit rpn9 (45 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-1 (28 kDa, Protein from Saccharomyces cerevisiae)
- 26s proteasome regulatory subunit rpn13 (17 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit beta type-2 (28 kDa, Protein from Saccharomyces cerevisiae)
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the si state
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 7qo5
Q-score: 0.133
Hung KYS, Klumpe S, Eisele MR, Elsasser S, Tian G, Sun S, Moroco JA, Cheng TC, Joshi T, Seibel T, Van Dalen D, Feng XH, Lu Y, Ovaa H, Engen JR, Lee BH, Rudack T, Sakata E, Finley D
Nat Commun (2022) 13 pp. 838-838 [ DOI: doi:10.1038/s41467-022-28186-y Pubmed: 35149681 ]
- 26s proteasome regulatory subunit 4 homolog (48 kDa, Protein from baker's yeast)
- 26s proteasome regulatory subunit rpn2 (104 kDa, Protein from baker's yeast)
- 26s proteasome regulatory subunit rpn5 (51 kDa, Protein from baker's yeast)
- Ubp6-ubvs complex (Complex from Saccharomyces cerevisiae)
- 26s proteasome subunit rpt4 (49 kDa, Protein from baker's yeast)
- 26s proteasome regulatory subunit rpn6 (49 kDa, Protein from baker's yeast)
- Yeast rpt1-rk 26s proteasome in si state (Complex from Saccharomyces cerevisiae)
- 26s proteasome regulatory subunit rpn3 (60 kDa, Protein from baker's yeast)
- Proteasome subunit beta type-2 (28 kDa, Protein from baker's yeast)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 26s proteasome regulatory subunit rpn1 (109 kDa, Protein from baker's yeast)
- Proteasome subunit alpha type-6 (25 kDa, Protein from baker's yeast)
- 26s proteasome regulatory subunit rpn7 (49 kDa, Protein from baker's yeast)
- Proteasome subunit alpha type-1 (28 kDa, Protein from baker's yeast)
- Proteasome subunit beta type-1 (23 kDa, Protein from baker's yeast)
- Proteasome subunit alpha type-4 (28 kDa, Protein from baker's yeast)
- Polyubiquitin-b (8 kDa, Protein from Homo sapiens)
- 26s proteasome regulatory subunit 8 homolog (45 kDa, Protein from baker's yeast)
- 26s proteasome regulatory subunit 6b homolog (47 kDa, Protein from baker's yeast)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 26s proteasome rpt1-rk -ubp6-ubvs complex in the si state (Complex)
- Proteasome subunit beta type-6 (26 kDa, Protein from baker's yeast)
- 26s proteasome complex subunit sem1 (10 kDa, Protein from baker's yeast)
- 26s proteasome regulatory subunit 6a (48 kDa, Protein from baker's yeast)
- Proteasome subunit beta type-4 (22 kDa, Protein from baker's yeast)
- Probable proteasome subunit alpha type-7 (31 kDa, Protein from baker's yeast)
- Proteasome subunit beta type-3 (22 kDa, Protein from baker's yeast)
- 26s proteasome regulatory subunit rpn10 (29 kDa, Protein from baker's yeast)
- Magnesium ion (24 Da, Ligand)
- Ubiquitin carboxyl-terminal hydrolase 6 (57 kDa, Protein from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-3 (28 kDa, Protein from baker's yeast)
- Proteasome subunit beta type-5 (31 kDa, Protein from baker's yeast)
- 26s proteasome regulatory subunit rpn12 (31 kDa, Protein from baker's yeast)
- 26s proteasome regulatory subunit rpn8 (38 kDa, Protein from baker's yeast)
- Proteasome subunit alpha type-5 (28 kDa, Protein from baker's yeast)
- Proteasome subunit beta type-7 (29 kDa, Protein from baker's yeast)
- Proteasome subunit alpha type-2 (27 kDa, Protein from baker's yeast)
- 26s proteasome regulatory subunit rpn13 (17 kDa, Protein from baker's yeast)
- 26s proteasome regulatory subunit 7 homolog (52 kDa, Protein from baker's yeast)
- 26s proteasome regulatory subunit rpn9 (45 kDa, Protein from baker's yeast)
- Ubiquitin carboxyl-terminal hydrolase rpn11 (34 kDa, Protein from baker's yeast)
yeast proteasome in substrate-processing state (C3-b)
Resolution: 7.5 Å
EM Method: Single-particle
Fitted PDBs: 6j2n
Q-score: 0.107
Ding Z, Xu C, Sahu I, Wang Y, Fu Z, Huang M, Wong CCL, Glickman MH, Cong Y
Mol Cell (2019) 73 pp. 1150- [ DOI: doi:10.1016/j.molcel.2019.01.018 Pubmed: 30792173 ]
- Proteasome subunit alpha type-1 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-4 (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-6 (26 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn7 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 7 homolog (52 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn3 (60 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn12 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn8 (38 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 6b homolog (47 kDa, Protein from Saccharomyces cerevisiae S288c)
- Probable proteasome subunit alpha type-7 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn1 (109 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn9 (45 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn2 (104 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 4 homolog (48 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-2 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- Yeast 26s proteasome (Complex from Saccharomyces cerevisiae S288c)
- Ubiquitin carboxyl-terminal hydrolase rpn11 (34 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-1 (23 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-2 (27 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome complex subunit sem1 (10 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn6 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 6a (48 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn5 (51 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-7 (29 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-5 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn13 (17 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-5 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn10 (29 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 8 homolog (45 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease subunit rpt4 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
yeast proteasome in Ub-engaged state (C2)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6j30
Q-score: 0.171
Ding Z, Xu C, Sahu I, Wang Y, Fu Z, Huang M, Wong CCL, Glickman MH, Cong Y
Mol Cell (2019) 73 pp. 1150- [ DOI: doi:10.1016/j.molcel.2019.01.018 Pubmed: 30792173 ]
- Proteasome subunit alpha type-1 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-4 (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-6 (26 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- Yeast proteasome (Complex from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit 4 homolog (48 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn7 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit 7 homolog (52 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn3 (60 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn12 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit 6b homolog (47 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn8 (38 kDa, Protein from Saccharomyces cerevisiae S288c)
- Probable proteasome subunit alpha type-7 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn1 (109 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn9 (45 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit 6a (48 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn2 (104 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-2 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ubiquitin carboxyl-terminal hydrolase rpn11 (34 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-1 (23 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-2 (27 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome complex subunit sem1 (10 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn6 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn5 (51 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit 8 homolog (45 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-7 (29 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome subunit rpt4 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-5 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn13 (17 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-5 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn10 (29 kDa, Protein from Saccharomyces cerevisiae S288c)
Yeast proteasome in translocation competent state (C3-a)
Resolution: 7.0 Å
EM Method: Single-particle
Fitted PDBs: 6j2c
Q-score: 0.117
Ding Z, Xu C, Sahu I, Wang Y, Fu Z, Huang M, Wong CCL, Glickman MH, Cong Y
Mol Cell (2019) 73 pp. 1150- [ DOI: doi:10.1016/j.molcel.2019.01.018 Pubmed: 30792173 ]
- Proteasome subunit alpha type-1 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-4 (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-6 (26 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn7 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 7 homolog (52 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn3 (60 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn12 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn8 (38 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 6b homolog (47 kDa, Protein from Saccharomyces cerevisiae S288c)
- Probable proteasome subunit alpha type-7 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn1 (109 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn9 (45 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn2 (104 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 4 homolog (48 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-2 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- Yeast 26s proteasome (Complex from Saccharomyces cerevisiae S288c)
- Ubiquitin carboxyl-terminal hydrolase rpn11 (34 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-1 (23 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-2 (27 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome complex subunit sem1 (10 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn6 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 6a (48 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn5 (51 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-7 (29 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-5 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn13 (17 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-5 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn10 (29 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 8 homolog (45 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease subunit rpt4 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
Yeast proteasome in Ub-accepted state (C1-b)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6j2q
Q-score: 0.264
Ding Z, Xu C, Sahu I, Wang Y, Fu Z, Huang M, Wong CCL, Glickman MH, Cong Y
Mol Cell (2019) 73 pp. 1150- [ DOI: doi:10.1016/j.molcel.2019.01.018 Pubmed: 30792173 ]
- Proteasome subunit alpha type-1 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-4 (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-6 (26 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn7 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 7 homolog (52 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn3 (60 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn12 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn8 (38 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 6b homolog (47 kDa, Protein from Saccharomyces cerevisiae S288c)
- Probable proteasome subunit alpha type-7 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn1 (109 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn9 (45 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn2 (104 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 4 homolog (48 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-2 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- Yeast 26s proteasome (Complex from Saccharomyces cerevisiae S288c)
- Ubiquitin carboxyl-terminal hydrolase rpn11 (34 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-1 (23 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-2 (27 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome complex subunit sem1 (10 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn6 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 6a (48 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn5 (51 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-7 (29 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-5 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn13 (17 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-5 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn10 (29 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 8 homolog (45 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease subunit rpt4 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
Yeast proteasome in resting state (C1-a)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6j2x
Q-score: 0.242
Ding Z, Xu C, Sahu I, Wang Y, Fu Z, Huang M, Wong CCL, Glickman MH, Cong Y
Mol Cell (2019) 73 pp. 1150- [ DOI: doi:10.1016/j.molcel.2019.01.018 Pubmed: 30792173 ]
- Proteasome subunit alpha type-1 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-4 (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn7 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit 7 homolog (52 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn5 (51 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn3 (60 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn12 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit 6b homolog (47 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn8 (38 kDa, Protein from Saccharomyces cerevisiae S288c)
- Probable proteasome subunit alpha type-7 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn1 (109 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn9 (45 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit 6a (48 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn2 (104 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s protease regulatory subunit 4 homolog (48 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-2 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- Yeast 26s proteasome (Complex from Saccharomyces cerevisiae S288c)
- Proteasome component c5 (26 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ubiquitin carboxyl-terminal hydrolase rpn11 (34 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-1 (23 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-2 (27 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome complex subunit sem1 (10 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn6 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit 8 homolog (45 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-7 (29 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome subunit rpt4 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit beta type-5 (31 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn13 (17 kDa, Protein from Saccharomyces cerevisiae S288c)
- Proteasome subunit alpha type-5 (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- 26s proteasome regulatory subunit rpn10 (29 kDa, Protein from Saccharomyces cerevisiae S288c)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6fvw
Q-score: 0.204
Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko Jr RJ, Sakata E
Cell Rep (2018) 24 pp. 1301-1315.e5 [ DOI: doi:10.1016/j.celrep.2018.07.004 Pubmed: 30067984 ]
- 26s proteasome regulatory subunit 6a (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-2 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome subunit rpt4 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn10 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn13 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn1 (106 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn5 (51 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-2 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-5 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-3 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn2 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Probable proteasome subunit alpha type-7 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 26s proteasome regulatory subunit rpn7 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 4 homolog (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 26s proteasome regulatory subunit 6b homolog (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Water (18 Da, Ligand)
- 26s proteasome regulatory subunit rpn8 (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-1 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn6 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn9 (45 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin carboxyl-terminal hydrolase rpn11 (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-5 (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 7 homolog (47 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- Proteasome subunit beta type-4 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-6 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn12 (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome complex subunit sem1 (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn3 (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-7 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-1 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 8 homolog (45 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Resolution: 5.4 Å
EM Method: Single-particle
Fitted PDBs: 6fvv
Q-score: 0.149
Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko Jr RJ, Sakata E
Cell Rep (2018) 24 pp. 1301-1315.e5 [ DOI: doi:10.1016/j.celrep.2018.07.004 Pubmed: 30067984 ]
- 26s proteasome regulatory subunit 6a (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-2 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome subunit rpt4 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 6b homolog (44 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 8 homolog (45 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 7 homolog (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn10 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn13 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn1 (106 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn5 (51 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 26s proteasome regulatory subunit rpn2 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn7 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 4 homolog (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Proteasome subunit alpha type-5 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-3 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn8 (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn6 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn9 (45 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin carboxyl-terminal hydrolase rpn11 (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Probable proteasome subunit alpha type-7 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-5 (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- Proteasome subunit alpha type-2 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-4 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-1 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-6 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn12 (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome complex subunit sem1 (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn3 (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-7 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-1 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 6fvx
Q-score: 0.187
Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko Jr RJ, Sakata E
Cell Rep (2018) 24 pp. 1301-1315.e5 [ DOI: doi:10.1016/j.celrep.2018.07.004 Pubmed: 30067984 ]
- 26s proteasome regulatory subunit 6a (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-2 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-1 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome subunit rpt4 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 6b homolog (44 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 8 homolog (45 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn10 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn13 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn1 (106 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn5 (51 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 26s proteasome regulatory subunit rpn2 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-3 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn7 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 4 homolog (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Proteasome subunit alpha type-5 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-2 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn8 (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn6 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn9 (45 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin carboxyl-terminal hydrolase rpn11 (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Probable proteasome subunit alpha type-7 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-5 (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 7 homolog (47 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- Proteasome subunit beta type-4 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-6 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn12 (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome complex subunit sem1 (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn3 (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-7 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-1 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))