Structure of nucleosome complexed with two DEK molecules
Kujirai T, Echigoya K, Kishi Y, Saeki M, Ito T, Kato J, Negishi L, Ogasawara M, Kimura H, Masumoto H, Takizawa Y, Gotoh Y, Kurumizaka H
To Be Published
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Protein dek (43 kDa, Protein from Homo sapiens)
- Dna (193-mer) (59 kDa, DNA from synthetic construct)
- Dek dimer bound to the nucleosome (Complex from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Dna (193-mer) (59 kDa, DNA from synthetic construct)
To Be Published
- Complex of mrgpre with agonist and g protein trimer (Complex from Rattus norvegicus)
- Scfv16 (28 kDa, Protein from synthetic construct)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Rattus norvegicus)
- Mrgpre (36 kDa, Protein from Equus quagga)
- (~{e})-3-(2-methoxyphenyl)prop-2-enal (162 Da, Ligand)
- Gq protein alpha subunit (41 kDa, Protein from Rattus norvegicus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Bos taurus)
Rhodobacter blasticus RC-LH1 dimer
Wang P, Christianson BM, Ugurlar D, Mao R, Zhang Y, Liu ZK, Zhang YY, Gardner AM, Gao J, Zhang YZ, Liu LN
Sci Adv (2024) 10 pp. eadp6678-eadp6678 [ Pubmed: 39383221 DOI: doi:10.1126/sciadv.adp6678 ]
- Antenna pigment protein alpha chain (7 kDa, Protein from Fuscovulum blasticum DSM 2131)
- Reaction center protein l chain (31 kDa, Protein from Fuscovulum blasticum DSM 2131)
- Ubiquinone-10 (863 Da, Ligand)
- Antenna pigment protein beta chain (5 kDa, Protein from Fuscovulum blasticum DSM 2131)
- Bacteriochlorophyll a (911 Da, Ligand)
- Spheroidene (568 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- 1-deoxy-d-xylulose-5-phosphate synthase (8 kDa, Protein from Fuscovulum blasticum DSM 2131)
- Fe (ii) ion (55 Da, Ligand)
- Rhodobacter blasticus rc-lh1 dimer (Complex from Fuscovulum blasticum DSM 2131)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Photosynthetic reaction center subunit h (28 kDa, Protein from Fuscovulum blasticum DSM 2131)
- Bacteriopheophytin a (889 Da, Ligand)
- Reaction center protein m chain (34 kDa, Protein from Fuscovulum blasticum DSM 2131)
Rhodobacter blasticus RC-LH1 monomer
Wang P, Christianson BM, Ugurlar D, Mao R, Zhang Y, Liu ZK, Zhang YY, Gardner AM, Gao J, Zhang YZ, Liu LN
Sci Adv (2024) 10 pp. eadp6678-eadp6678 [ Pubmed: 39383221 DOI: doi:10.1126/sciadv.adp6678 ]
- Antenna pigment protein alpha chain (7 kDa, Protein from Fuscovulum blasticum DSM 2131)
- Reaction center protein l chain (31 kDa, Protein from Fuscovulum blasticum DSM 2131)
- Ubiquinone-10 (863 Da, Ligand)
- Antenna pigment protein beta chain (5 kDa, Protein from Fuscovulum blasticum DSM 2131)
- Bacteriochlorophyll a (911 Da, Ligand)
- Spheroidene (568 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Rhodobacter blasticus rc-lh1 monomer (Complex from Fuscovulum blasticum DSM 2131)
- 1-deoxy-d-xylulose-5-phosphate synthase (8 kDa, Protein from Fuscovulum blasticum DSM 2131)
- Fe (ii) ion (55 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Photosynthetic reaction center subunit h (28 kDa, Protein from Fuscovulum blasticum DSM 2131)
- Bacteriopheophytin a (889 Da, Ligand)
- Reaction center protein m chain (34 kDa, Protein from Fuscovulum blasticum DSM 2131)
Kobayashi R, Nakano A, Mitsuoka K, Yokoyama K
To Be Published
- Atp synthase subunit beta (53 kDa, Protein from Bacillus sp. PS3)
- Atp synthase subunit alpha (54 kDa, Protein from Bacillus sp. PS3)
- Atp synthase gamma chain (31 kDa, Protein from Bacillus sp. PS3)
- Fof1 from bacillus sp. ps3 (Complex from Bacillus sp. PS3)
Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in YF24228-bound state
To Be Published
- Cytochrome b-c1 complex subunit 9, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae)
- (2r,5s,11r,14r)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate (834 Da, Ligand)
- Qcr6 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
- 5-(3,7,11,15,19,23-hexamethyl-tetracosa-2,6,10,14,18,22-hexaenyl)-2,3-dimethoxy-6-methyl-benzene-1,4-diol (592 Da, Ligand)
- (2r)-3-{[(s)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate (691 Da, Ligand)
- Cytochrome b-c1 complex subunit 8 (10 kDa, Protein from Saccharomyces cerevisiae)
- Cytochrome b-c1 complex subunit 10, mitochondrial (5 kDa, Protein from Saccharomyces cerevisiae)
- (5s,11r)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate (634 Da, Ligand)
- Cor1 isoform 1 (47 kDa, Protein from Saccharomyces cerevisiae)
- Metyltetraprole (396 Da, Ligand)
- Cytochrome b-c1 complex subunit 7 (14 kDa, Protein from Saccharomyces cerevisiae)
- Cytochrome b (43 kDa, Protein from Saccharomyces cerevisiae)
- Cytochrome b-c1 complex subunit rieske, mitochondrial (20 kDa, Protein from Saccharomyces cerevisiae)
- Cytochrome b-c1 complex subunit 2, mitochondrial (38 kDa, Protein from Saccharomyces cerevisiae)
- Saccharomyces cerevisiae bc1 complex (Complex from Saccharomyces cerevisiae)
- (1r)-2-{[(s)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate (593 Da, Ligand)
- (1r)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate (592 Da, Ligand)
- Cytochrome c1, heme protein, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae)
- Protoporphyrin ix containing fe (616 Da, Ligand)
Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in azoxystrobin-bound state
To Be Published
- Cytochrome b-c1 complex subunit 9, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae)
- (2r,5s,11r,14r)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate (834 Da, Ligand)
- Qcr6 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
- 5-(3,7,11,15,19,23-hexamethyl-tetracosa-2,6,10,14,18,22-hexaenyl)-2,3-dimethoxy-6-methyl-benzene-1,4-diol (592 Da, Ligand)
- (2r)-3-{[(s)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate (691 Da, Ligand)
- Cytochrome b-c1 complex subunit 8 (10 kDa, Protein from Saccharomyces cerevisiae)
- Cytochrome b-c1 complex subunit 10, mitochondrial (5 kDa, Protein from Saccharomyces cerevisiae)
- (5s,11r)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate (634 Da, Ligand)
- Cor1 isoform 1 (47 kDa, Protein from Saccharomyces cerevisiae)
- Cytochrome b-c1 complex subunit 7 (14 kDa, Protein from Saccharomyces cerevisiae)
- Cytochrome b (43 kDa, Protein from Saccharomyces cerevisiae)
- Methyl (2z)-2-(2-{[6-(2-cyanophenoxy)pyrimidin-4-yl]oxy}phenyl)-3-methoxyacrylate (403 Da, Ligand)
- Cytochrome b-c1 complex subunit rieske, mitochondrial (20 kDa, Protein from Saccharomyces cerevisiae)
- Cytochrome b-c1 complex subunit 2, mitochondrial (38 kDa, Protein from Saccharomyces cerevisiae)
- Saccharomyces cerevisiae bc1 complex (Complex from Saccharomyces cerevisiae)
- (1r)-2-{[(s)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate (593 Da, Ligand)
- (1r)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate (592 Da, Ligand)
- Cytochrome c1, heme protein, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae)
- Protoporphyrin ix containing fe (616 Da, Ligand)
Ternary complex of human DNA polymerase theta polymerase domain with a cognate C:G base pair
To Be Published
- Dna (5'-d(p*gp*cp*ap*tp*cp*cp*gp*tp*ap*gp*(2da))-3') (6 kDa, DNA from Homo sapiens)
- Ternary complex of human dna polymerase theta polymerase domain with a cognate c:g base pair (Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 2'-deoxyguanosine-5'-triphosphate (507 Da, Ligand)
- Dna polymerase theta (89 kDa, Protein from Homo sapiens)
- Dna (5'-d(*ap*gp*cp*tp*cp*tp*ap*cp*gp*gp*ap*tp*gp*c)-3') (8 kDa, DNA from Homo sapiens)
Ternary complex of human DNA polymerase theta polymerase domain with a mismatched T:T base pair
To Be Published
- Dna (5'-d(p*ap*gp*tp*gp*cp*tp*ap*cp*g)-3') (8 kDa, DNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Thymidine-5'-triphosphate (482 Da, Ligand)
- Ternary complex of human dna polymerase theta polymerase domain with a mismatched t:t base pair (Complex from Homo sapiens)
- Dna polymerase theta (89 kDa, Protein from Homo sapiens)
- Dna (5'-d(p*cp*gp*tp*ap*gp*(doc))-3') (6 kDa, DNA from Homo sapiens)
Ternary complex of human DNA polymerase theta polymerase domain with a mismatched T:G base pair
To Be Published
- Dna (5'-d(p*tp*gp*ap*gp*gp*cp*ap*tp*cp*cp*gp*tp*ap*gp*(doc))-3') (6 kDa, DNA from Homo sapiens)
- 2'-deoxyguanosine-5'-triphosphate (507 Da, Ligand)
- Ternary complex of human dna polymerase theta with duplex dna and incoming nucleotide (Complex from Homo sapiens)
- Dna (5'-d(p*gp*tp*gp*cp*tp*ap*cp*gp*gp*ap*tp*gp*cp*cp*tp*cp*a)-3') (8 kDa, DNA from Homo sapiens)
- Dna polymerase theta (89 kDa, Protein from Homo sapiens)