Versatile Aromatic Prenyltransferase auraA in complex with DMAPP and cyclo-(L-Val-L-His)
Resolution: 2.45 Å
EM Method: Single-particle
Fitted PDBs: 8y9d
Q-score: 0.635
Wang W, Wang P, Ma C, Li K, Wang Z, Liu Y, Wang L, Zhang G, Che Q, Zhu T, Zhang Y, Li D
Nat Commun (2025) 16 pp. 144-144 [ Pubmed: 39747040 DOI: doi:10.1038/s41467-024-55537-8 ]
- Water (18 Da, Ligand)
- (3~{s},6~{s})-3-(1~{h}-imidazol-4-ylmethyl)-6-propan-2-yl-piperazine-2,5-dione (236 Da, Ligand)
- Versatile aromatic prenyltransferase auraa (46 kDa, Protein from Penicillium)
- Versatile aromatic prenyltransferase auraa in complex with dmapp and cyclo-(l-val-l-his) (Complex from Penicillium)
- Dimethylallyl s-thiolodiphosphate (262 Da, Ligand)
Versatile Aromatic Prenyltransferase auraA in complex with DMSPP and cyclo-(L-Val-DH-His)
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 8y9g
Q-score: 0.607
Wang W, Wang P, Ma C, Li K, Wang Z, Liu Y, Wang L, Zhang G, Che Q, Zhu T, Zhang Y, Li D
Nat Commun (2025) 16 pp. 144-144 [ Pubmed: 39747040 DOI: doi:10.1038/s41467-024-55537-8 ]
- Water (18 Da, Ligand)
- Versatile aromatic prenyltransferase auraa in complex with dmspp and cyclo-(l-val-dh-his) (Complex from Penicillium)
- (3~{z},6~{s})-3-(1~{h}-imidazol-4-ylmethylidene)-6-propan-2-yl-piperazine-2,5-dione (234 Da, Ligand)
- Versatile aromatic prenyltransferase auraa (46 kDa, Protein from Penicillium)
- Dimethylallyl s-thiolodiphosphate (262 Da, Ligand)
The cryo-EM structure of TdpAB in complex with AMPPNP and PT-DNA
An T, Tan Q, Jiang L, Liu L, Jiang X, Liu L, Chang X, Tian X, Deng Z, Gao S, Wang L, Chen S
Nat Chem Biol (2025) [ DOI: doi:10.1038/s41589-024-01832-w Pubmed: 39820821 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Tdpa (66 kDa, Protein from Thermus antranikianii DSM 12462)
- Tdpab in complex with amppnp and pt-dna (Complex from Thermus antranikianii DSM 12462)
- Dna (5'-d(p*gp*cp*cp*cp*tp*tp*tp*tp*gp*cp*ap*a)-3') (3 kDa, DNA from Thermus antranikianii DSM 12462)
- Tdpb (42 kDa, Protein from Thermus antranikianii DSM 12462)
- Dna (5'-d(p*tp*tp*gp*cp*ap*ap*ap*ap*gp*gp*gp*c)-3') (3 kDa, DNA from Thermus antranikianii DSM 12462)
The cryo-EM structure of TdpAB in complex with AMPPNP and DNA
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 8wfd
Q-score: 0.599
An T, Tan Q, Jiang L, Liu L, Jiang X, Liu L, Chang X, Tian X, Deng Z, Gao S, Wang L, Chen S
Nat Chem Biol (2025) [ DOI: doi:10.1038/s41589-024-01832-w Pubmed: 39820821 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Tdpa (66 kDa, Protein from Thermus antranikianii DSM 12462)
- Tdpab in complex with amppnp and dna (Complex from Thermus antranikianii DSM 12462)
- Dna (5'-d(p*gp*cp*cp*cp*tp*tp*tp*tp*gp*cp*ap*a)-3') (3 kDa, DNA from Thermus antranikianii DSM 12462)
- Tdpb (42 kDa, Protein from Thermus antranikianii DSM 12462)
- Dna (5'-d(p*tp*tp*gp*cp*ap*ap*ap*ap*gp*gp*gp*c)-3') (3 kDa, DNA from Thermus antranikianii DSM 12462)
Cryo-EM structure of neutralizing antibody 8G3 in complex with BA.1 RBD
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9js4
Q-score: 0.434
Liao Y, Ma H, Wang Z, Wang S, He Y, Chang Y, Zong H, Tang H, Wang L, Ke Y, Cai H, Li P, Tang J, Chen H, Drelich A, Peng BH, Hsu J, Tat V, Tseng CK, Song J, Yuan Y, Wu M, Liu J, Yue Y, Zhang X, Wang Z, Yang L, Li J, Ni X, Li H, Xiang Y, Bian Y, Zhang B, Yin H, Dimitrov DS, Gilly J, Han L, Jiang H, Xie Y, Zhu J
PNAS (2025) 122 pp. e2406659122-e2406659122 [ DOI: doi:10.1073/pnas.2406659122 Pubmed: 39908098 ]
- Light chain of 8g3 (23 kDa, Protein from Homo sapiens)
- Cryo-em structure of neutralizing antibody 8g3 in complex with ba.1 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of 8g3 (23 kDa, Protein from Homo heidelbergensis)
- Spike glycoprotein (137 kDa, Protein from Severe acute respiratory syndrome coronavirus)
Curved structure of mPIEZO1-S2472E
Liu S, Yang X, Chen X, Zhang X, Jiang J, Yuan J, Liu W, Wang L, Zhou H, Wu K, Tian B, Li X, Xiao B
Neuron (2025) 113 pp. 590- [ Pubmed: 39719701 DOI: doi:10.1016/j.neuron.2024.11.020 ]
- S2472e-curved structure (Complex from Mus musculus)
- Piezo-type mechanosensitive ion channel component 1 (292 kDa, Protein from Mus musculus)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- (9r,11s)-9-({[(1s)-1-hydroxyhexadecyl]oxy}methyl)-2,2-dimethyl-5,7,10-trioxa-2lambda~5~-aza-6lambda~5~-phosphaoctacosane-6,6,11-triol (767 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
Flattened structure of mPIEZO1-S2472E
Liu S, Yang X, Chen X, Zhang X, Jiang J, Yuan J, Liu W, Wang L, Zhou H, Wu K, Tian B, Li X, Xiao B
Neuron (2025) 113 pp. 590- [ Pubmed: 39719701 DOI: doi:10.1016/j.neuron.2024.11.020 ]
- Piezo-type mechanosensitive ion channel component 1 (292 kDa, Protein from Mus musculus)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- (9r,11s)-9-({[(1s)-1-hydroxyhexadecyl]oxy}methyl)-2,2-dimethyl-5,7,10-trioxa-2lambda~5~-aza-6lambda~5~-phosphaoctacosane-6,6,11-triol (767 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- S2472e-intermediate structure (Complex from Mus musculus)
Cryo-EM strcuture of Cas5-HNH Cascade,apo-Conf2
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8zm3
Q-score: 0.22
To Be Published
- Cas5-hnh cascade (400 MDa, Complex from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Rna (61-mer) (19 kDa, RNA from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Magnesium ion (24 Da, Ligand)
- Crispr-associated protein cse2 (crispr_cse2) (20 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr system cascade subunit casd (43 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr system cascade subunit casc (41 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated protein cse1 (crispr_cse1) (60 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated endoribonuclease cse3 (31 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
Cryo-EM strcuture of Cas5-HNH Cascade,Conf3
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 8zol
Q-score: 0.364
To Be Published
- Cas5-hnh cascade (400 MDa, Complex from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Rna (61-mer) (19 kDa, RNA from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr system cascade subunit casd (43 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr system cascade subunit casc (41 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated endoribonuclease cse3 (31 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
Cryo-EM structure of Cas5-HNH Cascade bound with dsDNA
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 9jxs
Q-score: 0.446
Liu YN, Wang L, Zhang H, Zhu H
To Be Published
- Non-target dna (16 kDa, DNA from Escherichia coli)
- Cas5-hnh cascade complex bound with dna (400 MDa, Complex from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Magnesium ion (24 Da, Ligand)
- Dna (54-mer) (16 kDa, DNA from Escherichia coli)
- Crispr-associated protein cse2 (crispr_cse2) (20 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr system cascade subunit casc (41 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated protein cse1 (crispr_cse1) (60 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Rna (61-mer) (19 kDa, RNA from Escherichia coli)
- Crispr-associated endoribonuclease cse3 (31 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr system cascade subunit casd (43 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)