The structure of EfpA_BRD-8000.3 complex
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8ynz
Q-score: 0.406
Li D, Zhang X, Yao Y, Sun X, Sun J, Ma X, Yuan K, Bai G, Pang X, Hua R, Guo T, Mi Y, Wu L, Zhang J, Wu Y, Liu Y, Wang P, Wong CCL, Chen XW, Xiao H, Gao GF, Gao F
PNAS (2024) 121 pp. e2412653121-e2412653121 [ DOI: doi:10.1073/pnas.2412653121 Pubmed: 39441632 ]
- Efpa (Complex from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- (1s,3s)-n-[6-bromo-5-(pyrimidin-2-yl)pyridin-2-yl]-2,2-dimethyl-3-(2-methylprop-1-en-1-yl)cyclopropane-1-carboxamide (401 Da, Ligand)
- Uncharacterized mfs-type transporter efpa (59 kDa, Protein from Mycobacterium tuberculosis H37Rv)
pP1192R-DNA-m-AMSA complex DNA binding/cleavage domain
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 8yge
Q-score: 0.513
Liu R, Sun J, Li LF, Cheng Y, Li M, Fu L, Li S, Peng G, Wang Y, Liu S, Qu X, Ran J, Li X, Pang E, Qiu HJ, Wang Y, Qi J, Wang H, Gao GF
Nucleic Acids Res (2024) 52 pp. 11301-11316 [ Pubmed: 39166497 DOI: doi:10.1093/nar/gkae703 ]
- Magnesium ion (24 Da, Ligand)
- N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide (393 Da, Ligand)
- Dna (12-mer) (3 kDa, DNA from African swine fever virus pig/Kenya/KEN-50/1950)
- Pp1192r-dna-m-amsa complex dna binding/cleavage domain (Complex from African swine fever virus pig/Kenya/KEN-50/1950)
- Dna topoisomerase 2 (135 kDa, Protein from African swine fever virus pig/Kenya/KEN-50/1950)
- Dna (8-mer) (2 kDa, DNA from African swine fever virus pig/Kenya/KEN-50/1950)
- Dna (20-mer) (6 kDa, DNA from African swine fever virus pig/Kenya/KEN-50/1950)
Cryo-EM structure of SARS-CoV-2 BA.3 RBD in complex with golden hamster ACE2 (local refinement)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8kc2
Q-score: 0.556
Niu S, Zhao Z, Liu Z, Rong X, Chai Y, Bai B, Han P, Shang G, Ren J, Wang Y, Zhao X, Liu K, Tian WX, Wang Q, Gao GF
J Virol (2024) 98 pp. e0115723-e0115723 [ DOI: doi:10.1128/jvi.01157-23 Pubmed: 38305152 ]
- Ba.3 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Golden hamster angiotensin-converting enzyme 2 (Complex from Mesocricetus auratus)
- Cryo-em structure of sars-cov-2 ba.3 rbd in complex with golden hamster ace2 (local refinement) (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Angiotensin-converting enzyme (68 kDa, Protein from Mesocricetus auratus)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wwu
Q-score: 0.413
Zhang M, Peng R, Peng Q, Liu S, Li Z, Zhang Y, Song H, Yang J, Xing X, Wang P, Qi J, Gao GF
PNAS (2023) 120 pp. e2215098120-e2215098120 [ Pubmed: 37094126 DOI: doi:10.1073/pnas.2215098120 ]
- Apo-icp1 csy complex (Complex from Vibrio phage ICP1 2011 A)
- Guide-rna (19 kDa, RNA from Vibrio phage ICP1 2011 A)
- Csy4 (21 kDa, Protein from Vibrio phage ICP1 2011 A)
- Csy3 (35 kDa, Protein from Vibrio phage ICP1 2011 A)
- Csy1 (22 kDa, Protein from Vibrio phage ICP1 2011 A)
- Csy2 (29 kDa, Protein from Vibrio phage ICP1 2011 A)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7wwv
Q-score: 0.484
Zhang M, Peng R, Peng Q, Liu S, Li Z, Zhang Y, Song H, Yang J, Xing X, Wang P, Qi J, Gao GF
PNAS (2023) 120 pp. e2215098120-e2215098120 [ Pubmed: 37094126 DOI: doi:10.1073/pnas.2215098120 ]
- Target strand dna (18 kDa, DNA from Vibrio phage ICP1 2011 A)
- Non-target strand dna (18 kDa, DNA from Vibrio phage ICP1 2011 A)
- Guide-rna (19 kDa, RNA from Vibrio phage ICP1 2011 A)
- Target dna bound icp1 csy complex (Complex from Vibrio phage ICP1 2011 A)
- Csy3 (35 kDa, Protein from Vibrio phage ICP1 2011 A)
- Csy1 (22 kDa, Protein from Vibrio phage ICP1 2011 A)
- Csy2 (29 kDa, Protein from Vibrio phage ICP1 2011 A)
The structure of EBOV L-VP35 in complex with suramin
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7yet
Q-score: 0.45
Yuan B, Peng Q, Cheng J, Wang M, Zhong J, Qi J, Gao GF, Shi Y
Nature (2022) 610 pp. 394-401 [ DOI: doi:10.1038/s41586-022-05271-2 Pubmed: 36171293 ]
- 8,8'-[carbonylbis[imino-3,1-phenylenecarbonylimino(4-methyl-3,1-phenylene)carbonylimino]]bis-1,3,5-naphthalenetrisulfon ic acid (1 kDa, Ligand)
- Rna-directed rna polymerase l (252 kDa, Protein from Ebola virus)
- Polymerase cofactor vp35 (37 kDa, Protein from Ebola virus)
- The complex of ebov l-vp35-suramin (Complex from Ebola virus)
Complex of Echo 18 and FcRn at pH7.4
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7xxa
Q-score: 0.49
Chen X, Qu X, Liu C, Zhang Y, Zhang G, Han P, Duan Y, Li Q, Wang L, Ruan W, Wang P, Wei W, Gao GF, Zhao X, Xie Z
Mbio (2022) 13 pp. e0116622-e0116622 [ Pubmed: 35862785 DOI: doi:10.1128/mbio.01166-22 ]
- Igg receptor fcrn large subunit p51 (29 kDa, Protein from Homo sapiens)
- Fcrn (Complex)
- Vp4 (7 kDa, Protein from Echovirus E18)
- Vp1 (35 kDa, Protein from Echovirus E18)
- Vp3 (26 kDa, Protein from Echovirus E18)
- Vp2 (28 kDa, Protein from Echovirus E18)
- Homo sapiens (Virus from Homo sapiens)
- Echovirus e18 (Complex from Echovirus E18)
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 7xxg
Q-score: 0.358
Chen X, Qu X, Liu C, Zhang Y, Zhang G, Han P, Duan Y, Li Q, Wang L, Ruan W, Wang P, Wei W, Gao GF, Zhao X, Xie Z
Mbio (2022) 13 pp. e0116622-e0116622 [ Pubmed: 35862785 DOI: doi:10.1128/mbio.01166-22 ]
- Palmitic acid (256 Da, Ligand)
- Vp4 (7 kDa, Protein from Echovirus E18)
- Vp3 (26 kDa, Protein from Echovirus E18)
- Vp1 (31 kDa, Protein from Echovirus E18)
- Vp2 (28 kDa, Protein from Echovirus E18)
- Echovirus e18 (Virus from Echovirus E18)
Echo 18 incubated with FcRn at pH5.5
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7xxj
Q-score: 0.491
Chen X, Qu X, Liu C, Zhang Y, Zhang G, Han P, Duan Y, Li Q, Wang L, Ruan W, Wang P, Wei W, Gao GF, Zhao X, Xie Z
Mbio (2022) 13 pp. e0116622-e0116622 [ Pubmed: 35862785 DOI: doi:10.1128/mbio.01166-22 ]
- Palmitic acid (256 Da, Ligand)
- Vp4 (7 kDa, Protein from Echovirus E18)
- Vp3 (26 kDa, Protein from Echovirus E18)
- Vp1 (31 kDa, Protein from Echovirus E18)
- Vp2 (28 kDa, Protein from Echovirus E18)
- Echovirus e18 (Virus from Echovirus E18)