Varicella-zoster virus glycoprotein B; H527P prefusion class I.
Zhou M, Vollmer B, Machala E, Chen M, Grunewald K, Arvin AM, Chiu W, Oliver SL
Nat Commun (2023) 14 pp. 7958-7958 [ Pubmed: 38042814 DOI: doi:10.1038/s41467-023-43011-w ]
Varicella-zoster virus glycoprotein B; H527P prefusion mutant class II.
Zhou M, Vollmer B, Machala E, Chen M, Grunewald K, Arvin AM, Chiu W, Oliver SL
Nat Commun (2023) 14 pp. 7958-7958 [ Pubmed: 38042814 DOI: doi:10.1038/s41467-023-43011-w ]
Hexameric human IgG3 Fc complex
Resolution: 14.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8btb
Q-score: 0.084
Abendstein L, Dijkstra DJ, Tjokrodirijo RTN, van Veelen PA, Trouw LA, Hensbergen PJ, Sharp TH
Nat Commun (2023) 14 pp. 4027-4027 [ Pubmed: 37419978 DOI: doi:10.1038/s41467-023-39788-5 ]
- Fc domain of human igg3 (Complex from Homo sapiens)
- Flj00385 protein (fragment) (23 kDa, Protein from Homo sapiens)
- Flj00385 protein (fragment) (23 kDa, Protein from Homo sapiens)
Subtomogram average of a IgG3-C1-C4b complex on a lipid bilayer
Abendstein L, Dijkstra DJ, Tjokrodirijo RTN, van Veelen PA, Trouw LA, Hensbergen PJ, Sharp TH
Nat Commun (2023) 14 pp. 4027-4027 [ Pubmed: 37419978 DOI: doi:10.1038/s41467-023-39788-5 ]
Subtomogram average of a complex of IgG3-C1-C4b after focussed refinement around the C4b region
Abendstein L, Dijkstra DJ, Tjokrodirijo RTN, van Veelen PA, Trouw LA, Hensbergen PJ, Sharp TH
Nat Commun (2023) 14 pp. 4027-4027 [ Pubmed: 37419978 DOI: doi:10.1038/s41467-023-39788-5 ]
Subtomogram average of a complex of IgG3-C1-C4b after focussed refinement around the C1 region
Abendstein L, Dijkstra DJ, Tjokrodirijo RTN, van Veelen PA, Trouw LA, Hensbergen PJ, Sharp TH
Nat Commun (2023) 14 pp. 4027-4027 [ Pubmed: 37419978 DOI: doi:10.1038/s41467-023-39788-5 ]
Mammalian orthoreovirus T3SA- in complex with the neural receptor NgR1
Sutherland DM, Strebl M, Koehler M, Welsh OL, Yu X, Hu L, Dos Santos Natividade R, Knowlton JJ, Taylor GM, Moreno RA, Worz P, Lonergan ZR, Aravamudhan P, Guzman-Cardozo C, Kour S, Pandey UB, Alsteens D, Wang Z, Prasad BVV, Stehle T, Dermody TS
PNAS (2023) 120 pp. e2219404120-e2219404120 [ DOI: doi:10.1073/pnas.2219404120 Pubmed: 37276413 ]
- Mammalian orthoreovirus t3sa- in complex with the neural receptor ngr1 (Complex)
- Nogo receptor 1 (Complex from Homo sapiens)
- T3sa- reovirus inner capsid protein lambda1 (Protein from Mammalian orthoreovirus 3 Dearing)
- T3sa- reovirus outer capsid protein sigma3 (Protein from Mammalian orthoreovirus 3 Dearing)
- Nogo receptor 1 (Protein from Homo sapiens)
- T3sa- reovirus outer capsid protein lambda2 (Protein from Mammalian orthoreovirus 3 Dearing)
- T3sa- reovirus inner capsid protein sigma2 (Protein from Mammalian orthoreovirus 3 Dearing)
- Mammalian orthoreovirus t3sa- in complex (Complex from Mammalian orthoreovirus 3 Dearing)
- T3sa- reovirus outer capsid protein mu1 (Protein from Mammalian orthoreovirus 3 Dearing)
Sutherland DM, Strebl M, Koehler M, Welsh OL, Yu X, Hu L, Dos Santos Natividade R, Knowlton JJ, Taylor GM, Moreno RA, Worz P, Lonergan ZR, Aravamudhan P, Guzman-Cardozo C, Kour S, Pandey UB, Alsteens D, Wang Z, Prasad BVV, Stehle T, Dermody TS
PNAS (2023) 120 pp. e2219404120-e2219404120 [ DOI: doi:10.1073/pnas.2219404120 Pubmed: 37276413 ]
- Mammalian orthoreovirus 3 dearing (Virus from Mammalian orthoreovirus 3 Dearing)
- T3sa- reovirus inner capsid protein lambda1 (Protein from Mammalian orthoreovirus 3 Dearing)
- T3sa- reovirus outer capsid protein sigma3 (Protein from Mammalian orthoreovirus 3 Dearing)
- T3sa- reovirus outer capsid protein lambda2 (Protein from Mammalian orthoreovirus 3 Dearing)
- T3sa- reovirus inner capsid protein sigma2 (Protein from Mammalian orthoreovirus 3 Dearing)
- T3sa- reovirus outer capsid protein mu1 (Protein from Mammalian orthoreovirus 3 Dearing)
Cryo-EM structure (model_1a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.4 A
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 7o0u
Q-score: 0.629
Qian P, Gardiner AT, Simova I, Naydenova K, Croll TI, Jackson PJ, Kloz M, Cubakova P, Kuzma M, Zeng Y, Castro-Hartmann P, van Knippenberg B, Goldie KN, Kaftan D, Hrouzek P, Hajek J, Agirre J, Siebert CA, Bina D, Sader K, Stahlberg H, Sobotka R, Russo CJ, Polivka T, Hunter CN, Koblizek M
Sci Adv (2022) 8 pp. eabk3139-eabk3139 [ DOI: doi:10.1126/sciadv.abk3139 Pubmed: 35171663 ]
- Lhc domain-containing protein (7 kDa, Protein from Gemmatimonas phototrophica)
- Multiheme_cytc domain-containing protein (38 kDa, Protein from Gemmatimonas phototrophica)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Lhh-alpha (6 kDa, Protein from Gemmatimonas phototrophica)
- Rc-dlh model_1a (800 kDa, Complex from Gemmatimonas phototrophica)
- Rc-hc (20 kDa, Protein from Gemmatimonas phototrophica)
- Bacteriochlorophyll a (911 Da, Ligand)
- (1r)-2-{[(s)-{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9z)-octadec-9-enoate (749 Da, Ligand)
- Photosynthetic reaction center l subunit (30 kDa, Protein from Gemmatimonas phototrophica)
- (2r,5r,11r,14r)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate (1 kDa, Ligand)
- Rc-s (21 kDa, Protein from Gemmatimonas phototrophica)
- [(2~{s})-3-[(2~{r},3~{r},4~{s},5~{s},6~{r})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-octadecanoyloxy-propyl] octadecanoate (787 Da, Ligand)
- (19r,22s)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9z)-hexadec-9-enoate (689 Da, Ligand)
- Prch domain-containing protein (7 kDa, Protein from Gemmatimonas phototrophica)
- Menaquinone 8 (717 Da, Ligand)
- Bacteriopheophytin a (889 Da, Ligand)
- [(2~{s})-3-[(2~{r},3~{r},4~{r},5~{s},6~{r})-6-(hydroxymethyl)-5-[(2~{r},3~{r},4~{s},5~{s},6~{r})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-2-(12-methyltridecanoyloxy)propyl] 12-methyltridecanoate (837 Da, Ligand)
- (2~{s},3~{s},4~{s},5~{s})-4,5-diacetyloxy-3-oxidanyl-oxane-2-carboxylic acid (262 Da, Ligand)
- (2~{e},4~{e},6~{e},10~{e},12~{e},14~{e},16~{e},18~{e},20~{e},22~{z},24~{e},26~{e},28~{e})-23-methanoyl-31-methoxy-2,6,10,14,19,27,31-heptamethyl-dotriaconta-2,4,6,10,12,14,16,18,20,22,24,26,28-tridecaenoic acid (610 Da, Ligand)
- Heme c (618 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Rc-m (41 kDa, Protein from Gemmatimonas phototrophica)
- Spirilloxanthin (596 Da, Ligand)
- Water (18 Da, Ligand)
- 2-acetamido-2-deoxy-alpha-d-glucopyranose (221 Da, Ligand)
- Light-harvesting protein b:885 subunit beta (5 kDa, Protein from Gemmatimonas phototrophica)