Late assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7pub
Q-score: 0.436
Lenarcic T, Niemann M, Ramrath DJF, Calderaro S, Flugel T, Saurer M, Leibundgut M, Boehringer D, Prange C, Horn EK, Schneider A, Ban N
PNAS (2022) 119 [ Pubmed: 35042777 DOI: doi:10.1073/pnas.2114710118 ]
- Us3m (9 kDa, Protein from Trypanosoma brucei brucei)
- Ms22 (73 kDa, Protein from Trypanosoma brucei brucei)
- Ms58 (35 kDa, Protein from Trypanosoma brucei brucei)
- Ms37 (24 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf39 (89 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf6 (76 kDa, Protein from Trypanosoma brucei brucei)
- Bs18m (36 kDa, Protein from Trypanosoma brucei brucei)
- Ms74 (8 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Ech_2 domain-containing protein (137 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf22 (39 kDa, Protein from Trypanosoma brucei brucei)
- Ms62 (32 kDa, Protein from Trypanosoma brucei brucei)
- Ms48 (201 kDa, Protein from Trypanosoma brucei brucei)
- Ms70 (21 kDa, Protein from Trypanosoma brucei brucei)
- Ms34 (28 kDa, Protein from Trypanosoma brucei brucei)
- Ms38 (28 kDa, Protein from Trypanosoma brucei brucei)
- 9s rrna (198 kDa, RNA from Trypanosoma brucei brucei)
- Us14m (19 kDa, Protein from Trypanosoma brucei brucei)
- Unki (869 Da, Protein from Trypanosoma brucei brucei)
- Ms52 (84 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Ms69 (21 kDa, Protein from Trypanosoma brucei brucei)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ms54 (72 kDa, Protein from Trypanosoma brucei brucei)
- Us19m (28 kDa, Protein from Trypanosoma brucei brucei)
- Ms51 (95 kDa, Protein from Trypanosoma brucei brucei)
- Protein fyv4, mitochondrial (22 kDa, Protein from Trypanosoma brucei brucei)
- Ms23 (36 kDa, Protein from Trypanosoma brucei brucei)
- Ms71 (20 kDa, Protein from Trypanosoma brucei brucei)
- Ms59 (35 kDa, Protein from Trypanosoma brucei brucei)
- Ms60 (34 kDa, Protein from Trypanosoma brucei brucei)
- Us9m (50 kDa, Protein from Trypanosoma brucei brucei)
- Ms49 (137 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Unkg (1 kDa, Protein from Trypanosoma brucei brucei)
- Bs16m (22 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf38 (69 kDa, Protein from Trypanosoma brucei brucei)
- Us15m (50 kDa, Protein from Trypanosoma brucei brucei)
- Ubiquitin-like domain-containing protein (26 kDa, Protein from Trypanosoma brucei brucei)
- Ms63 (31 kDa, Protein from Trypanosoma brucei brucei)
- Rhodanese domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Superoxide dismutase, putative (29 kDa, Protein from Trypanosoma brucei brucei)
- Unk (1 kDa, Protein from Trypanosoma brucei brucei)
- Ms35 (98 kDa, Protein from Trypanosoma brucei brucei)
- Late assembly intermediate of the trypanosoma brucei mitoribosomal small subunit (Complex from Trypanosoma brucei brucei)
- Phosphate ion (94 Da, Ligand)
- Ms50 (131 kDa, Protein from Trypanosoma brucei brucei)
- Ms73 (11 kDa, Protein from Trypanosoma brucei brucei)
- Lysm domain-containing protein (94 kDa, Protein from Trypanosoma brucei brucei)
- Ms65 (30 kDa, Protein from Trypanosoma brucei brucei)
- Ms53 (75 kDa, Protein from Trypanosoma brucei brucei)
- Ms33 (21 kDa, Protein from Trypanosoma brucei brucei)
- Us11m (37 kDa, Protein from Trypanosoma brucei brucei)
- Ms61 (33 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal_s5_c domain-containing protein (50 kDa, Protein from Trypanosoma brucei brucei)
- Sod_fe_c domain-containing protein (48 kDa, Protein from Trypanosoma brucei brucei)
- 30s ribosomal protein s17, putative (35 kDa, Protein from Trypanosoma brucei brucei)
- Bs6m (18 kDa, Protein from Trypanosoma brucei brucei)
- Akap7_nls domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Unkk (273 Da, Protein from Trypanosoma brucei brucei)
- Translation initiation factor if-2, putative (87 kDa, Protein from Trypanosoma brucei brucei)
- Ms66 (29 kDa, Protein from Trypanosoma brucei brucei)
- Unkl (1 kDa, Protein from Trypanosoma brucei brucei)
- Ms56 (47 kDa, Protein from Trypanosoma brucei brucei)
- Ms55 (66 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf7 (76 kDa, Protein from Trypanosoma brucei brucei)
- Unk7 (3 kDa, Protein from Trypanosoma brucei brucei)
- Ms26 (51 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf9 (69 kDa, Protein from Trypanosoma brucei brucei)
- Ms57 (45 kDa, Protein from Trypanosoma brucei brucei)
- Ms29 (57 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf37 (37 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Bs21m (23 kDa, Protein from Trypanosoma brucei brucei)
- 30s ribosomal protein s8, putative (32 kDa, Protein from Trypanosoma brucei brucei)
- Dna photolyase, putative (95 kDa, Protein from Trypanosoma brucei brucei)
- Acyl transferase-like protein (60 kDa, Protein from Trypanosoma brucei brucei)
- Unke (4 kDa, Protein from Trypanosoma brucei brucei)
- Ms72 (19 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Mt-saf3 (106 kDa, Protein from Trypanosoma brucei brucei)
- Us12m (10 kDa, Protein from Trypanosoma brucei brucei)
- Unkf (3 kDa, Protein from Trypanosoma brucei brucei)
Middle assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7pua
Q-score: 0.436
Lenarcic T, Niemann M, Ramrath DJF, Calderaro S, Flugel T, Saurer M, Leibundgut M, Boehringer D, Prange C, Horn EK, Schneider A, Ban N
PNAS (2022) 119 [ Pubmed: 35042777 DOI: doi:10.1073/pnas.2114710118 ]
- Us3m (9 kDa, Protein from Trypanosoma brucei brucei)
- Middle assembly intermediate of the trypanosoma brucei mitoribosomal small subunit (Complex from Trypanosoma brucei brucei)
- Ms22 (73 kDa, Protein from Trypanosoma brucei brucei)
- Ms37 (24 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf39 (89 kDa, Protein from Trypanosoma brucei brucei)
- Bs18m (36 kDa, Protein from Trypanosoma brucei brucei)
- Unk (698 Da, Protein from Trypanosoma brucei brucei)
- Ms74 (8 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf22 (39 kDa, Protein from Trypanosoma brucei brucei)
- Ms62 (32 kDa, Protein from Trypanosoma brucei brucei)
- Lmwpc domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Unkp (2 kDa, Protein from Trypanosoma brucei brucei)
- Unk8 (2 kDa, Protein from Trypanosoma brucei brucei)
- Ms70 (21 kDa, Protein from Trypanosoma brucei brucei)
- Ms34 (28 kDa, Protein from Trypanosoma brucei brucei)
- Ms38 (28 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf21 (39 kDa, Protein from Trypanosoma brucei brucei)
- Duf4379 domain-containing protein (16 kDa, Protein from Trypanosoma brucei brucei)
- 9s rrna (198 kDa, RNA from Trypanosoma brucei brucei)
- Ms58 (35 kDa, Protein from Trypanosoma brucei brucei)
- Ms51 (93 kDa, Protein from Trypanosoma brucei brucei)
- Ppr_long domain-containing protein (116 kDa, Protein from Trypanosoma brucei brucei)
- Acyl carrier protein (16 kDa, Protein from Trypanosoma brucei brucei)
- Us14m (19 kDa, Protein from Trypanosoma brucei brucei)
- Ms52 (84 kDa, Protein from Trypanosoma brucei brucei)
- Unkd (1 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Ms69 (21 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf29 (20 kDa, Protein from Trypanosoma brucei brucei)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ms54 (72 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf23 (38 kDa, Protein from Trypanosoma brucei brucei)
- Us19m (28 kDa, Protein from Trypanosoma brucei brucei)
- S-(2-{[n-(2-hydroxy-4-{[hydroxy(oxido)phosphino]oxy}-3,3-dimethylbutanoyl)-beta-alanyl]amino}ethyl) decanethioate (496 Da, Ligand)
- Protein fyv4, mitochondrial (22 kDa, Protein from Trypanosoma brucei brucei)
- Ms23 (36 kDa, Protein from Trypanosoma brucei brucei)
- Ms71 (20 kDa, Protein from Trypanosoma brucei brucei)
- Ms59 (35 kDa, Protein from Trypanosoma brucei brucei)
- Us9m (50 kDa, Protein from Trypanosoma brucei brucei)
- Ms49 (137 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Acyl transferase-like protein, putative (60 kDa, Protein from Trypanosoma brucei brucei)
- Bs16m (22 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf31 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf38 (69 kDa, Protein from Trypanosoma brucei brucei)
- Us15m (50 kDa, Protein from Trypanosoma brucei brucei)
- Ubiquitin-like domain-containing protein (26 kDa, Protein from Trypanosoma brucei brucei)
- Ms63 (31 kDa, Protein from Trypanosoma brucei brucei)
- Rhodanese domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf5 (86 kDa, Protein from Trypanosoma brucei brucei)
- Unkk (2 kDa, Protein from Trypanosoma brucei brucei)
- Ms35 (98 kDa, Protein from Trypanosoma brucei brucei)
- Phosphate ion (94 Da, Ligand)
- Ms50 (131 kDa, Protein from Trypanosoma brucei brucei)
- Unka (869 Da, Protein from Trypanosoma brucei brucei)
- Ms73 (11 kDa, Protein from Trypanosoma brucei brucei)
- Unki (528 Da, Protein from Trypanosoma brucei brucei)
- Mt-saf9 (69 kDa, Protein from Trypanosoma brucei brucei)
- Lysm domain-containing protein (94 kDa, Protein from Trypanosoma brucei brucei)
- Ms65 (30 kDa, Protein from Trypanosoma brucei brucei)
- Ms53 (75 kDa, Protein from Trypanosoma brucei brucei)
- Ms33 (21 kDa, Protein from Trypanosoma brucei brucei)
- Us11m (37 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal_s5_c domain-containing protein (50 kDa, Protein from Trypanosoma brucei brucei)
- 9s rrna (919 Da, RNA from Trypanosoma brucei brucei)
- 30s ribosomal protein s17, putative (35 kDa, Protein from Trypanosoma brucei brucei)
- Bs6m (18 kDa, Protein from Trypanosoma brucei brucei)
- Unkf (3 kDa, Protein from Trypanosoma brucei brucei)
- Translation initiation factor if-2, putative (87 kDa, Protein from Trypanosoma brucei brucei)
- Dihydroflavine-adenine dinucleotide (787 Da, Ligand)
- Ms56 (47 kDa, Protein from Trypanosoma brucei brucei)
- Ms55 (66 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf7 (76 kDa, Protein from Trypanosoma brucei brucei)
- Ms26 (51 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Ms57 (45 kDa, Protein from Trypanosoma brucei brucei)
- Ms29 (57 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf37 (37 kDa, Protein from Trypanosoma brucei brucei)
- Unkg (23 kDa, Protein from Trypanosoma brucei brucei)
- Bs21m (23 kDa, Protein from Trypanosoma brucei brucei)
- 30s ribosomal protein s8, putative (32 kDa, Protein from Trypanosoma brucei brucei)
- Dna photolyase, putative (95 kDa, Protein from Trypanosoma brucei brucei)
- Unkc (783 Da, Protein from Trypanosoma brucei brucei)
- Mt-saf27 (26 kDa, Protein from Trypanosoma brucei brucei)
- Duf4460 domain-containing protein (76 kDa, Protein from Trypanosoma brucei brucei)
- Unkg (1 kDa, Protein from Trypanosoma brucei brucei)
- Ms72 (19 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Mt-saf3 (106 kDa, Protein from Trypanosoma brucei brucei)
- Us12m (10 kDa, Protein from Trypanosoma brucei brucei)
Ribosomal methyltransferase KsgA bound to small ribosomal subunit
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7o5h
Q-score: 0.503
Stephan NC, Ries AB, Boehringer D, Ban N
Nucleic Acids Res (2021) 49 pp. 6389-6398 [ Pubmed: 34086932 DOI: doi:10.1093/nar/gkab430 ]
- Ksga bound to bacterial ribosomal small subunit 30s (Complex from Escherichia coli)
- 16s rrna (312 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (25 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6, fully modified isoform (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- Ribosomal rna small subunit methyltransferase a (27 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s18 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
Cryo-EM reconstruction of the small subunit of the Mycobacterium smegmatis ribosome
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 5o5j
Q-score: 0.46
Hentschel J, Burnside C, Mignot I, Leibundgut M, Boehringer D, Ban N
Cell Rep (2017) 20 pp. 149-160 [ Pubmed: 28683309 DOI: doi:10.1016/j.celrep.2017.06.029 ]
- 30s ribosomal protein s16 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s18 2 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s11 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Trna-phe anticodon stem (6 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s9 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s small ribosomal subunit (Complex from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s17 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 16s rrna (495 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Conserved domain protein (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Mrna fragment (1 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
Cryo-EM reconstruction of the Mycobacterium smegmatis 70S ribosome
Hentschel J, Burnside C, Mignot I, Leibundgut M, Boehringer D, Ban N
Cell Rep (2017) 20 pp. 149-160 [ Pubmed: 28683309 DOI: doi:10.1016/j.celrep.2017.06.029 ]
- 50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s16 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s18 2 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s11 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Lsu ribosomal protein l28p (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein bl37 (2 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 70s ribosome (Complex from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s9 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Phenylalanine (165 Da, Ligand from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s17 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l23 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 5s rrna (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 16s rrna (495 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l11 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Conserved domain protein (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- P/p-site phe-trna(phe) (24 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 23s rrna (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l10 (18 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Mrna fragment (1 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
Cryo-EM reconstruction of the small subunit of the chloroplast ribosome
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5mmj
Q-score: 0.396
Bieri P, Leibundgut M, Saurer M, Boehringer D, Ban N
EMBO J (2017) 36 pp. 475-486 [ DOI: doi:10.15252/embj.201695959 Pubmed: 28007896 ]
- 50s ribosomal protein l31 (14 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s12, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- Chloroplast 70s ribosome (2 MDa, Complex from Spinacia oleracea)
- 30s ribosomal protein s3, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s5, chloroplastic (33 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s8, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us13c (19 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us9c (22 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs20c (20 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs6c (23 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs21c (20 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s2, chloroplastic (26 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s16, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- 16s ribosomal rna (483 kDa, RNA from Spinacia oleracea)
- 30s ribosomal protein s4, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us10c (21 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us17c (18 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs1c (14 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein 3, chloroplastic (20 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s14, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s15, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s31, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s11, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s18, chloroplastic (12 kDa, Protein from Spinacia oleracea)
- Ribosome-binding factor psrp1, chloroplastic (33 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s7, chloroplastic (17 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s19 alpha, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein 2, chloroplastic (28 kDa, Protein from Spinacia oleracea)
Cryo-EM reconstruction of the 70S chloroplast ribosome
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 5mmm
Q-score: 0.406
Bieri P, Leibundgut M, Saurer M, Boehringer D, Ban N
EMBO J (2017) 36 pp. 475-486 [ DOI: doi:10.15252/embj.201695959 Pubmed: 28007896 ]
- 50s ribosomal protein l31 (14 kDa, Protein from Spinacia oleracea)
- 5s ribosomal rna (39 kDa, RNA from Spinacia oleracea)
- 30s ribosomal protein s12, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l36, chloroplastic (4 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l32, chloroplastic (6 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bl9c (22 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l34, chloroplastic (16 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul6c (24 kDa, Protein from Spinacia oleracea)
- 4.5s ribosomal rna (34 kDa, RNA from Spinacia oleracea)
- Plastid ribosomal protein ul4c (32 kDa, Protein from Spinacia oleracea)
- Zinc ion (65 Da, Ligand)
- Plastid ribosomal protein ul3c (33 kDa, Protein from Spinacia oleracea)
- 23s ribosomal rna (911 kDa, RNA from Spinacia oleracea)
- Chloroplast 70s ribosome (2 MDa, Complex from Spinacia oleracea)
- Plastid ribosomal protein ul14c (14 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein 6, chloroplastic (12 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s3, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l2, chloroplastic (29 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l22, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s5, chloroplastic (33 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s8, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bl28c (16 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us13c (19 kDa, Protein from Spinacia oleracea)
- Trna-phe (24 kDa, RNA from Spinacia oleracea)
- 50s ribosomal protein l35, chloroplastic (17 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l14, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us9c (22 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs20c (20 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul29c (19 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs6c (23 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l21, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul5c (28 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l33, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l23, chloroplastic (21 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs21c (20 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s2, chloroplastic (26 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l13, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein cl37, psrp5 (15 kDa, Protein from Spinacia oleracea)
- 16s ribosomal rna (483 kDa, RNA from Spinacia oleracea)
- 30s ribosomal protein s4, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us10c (21 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l19, chloroplastic (26 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s16, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l20, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us17c (18 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l11, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul18c (18 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul24c (21 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs1c (14 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul15c (29 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein 3, chloroplastic (20 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s14, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s15, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s31, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s11, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s18, chloroplastic (12 kDa, Protein from Spinacia oleracea)
- Ribosome-binding factor psrp1, chloroplastic (33 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s7, chloroplastic (17 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul10c (26 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bl27c (21 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l16, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s19 alpha, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein 2, chloroplastic (28 kDa, Protein from Spinacia oleracea)
Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit
Resolution: 13.5 Å
EM Method: Single-particle
Fitted PDBs: 4adv
Q-score: 0.061
Boehringer D, O'Farrell HC, Rife JP, Ban N
J Biol Chem (2012) 287 pp. 10453-10459 [ Pubmed: 22308031 DOI: doi:10.1074/jbc.M111.318121 ]
- E. coli methyltransferase ksga bound to the e. coli 30s ribosomal subunit (820 kDa, Sample)
- E. coli 30s ribosomal subunit (790 kDa, Complex from Escherichia coli)
- Methyltransferase ksga (30 kDa, Protein from Escherichia coli)
Structure of the E. coli 30S ribosomal subunit from a ksgA deletion strain
Boehringer D, O'Farrell HC, Rife JP, Ban N
J Biol Chem (2012) 287 pp. 10453-10459 [ DOI: doi:10.1074/jbc.M111.318121 Pubmed: 22308031 ]
- E. coli 30s ribosomal subunit from a ksga deletion strain (790 kDa, Sample)
- 30s ribosomal subunit (790 kDa, Complex from Escherichia coli)
Boehringer D, O'Farrell HC, Rife JP, Ban N
J Biol Chem (2012) 287 pp. 10453-10459 [ DOI: doi:10.1074/jbc.M111.318121 Pubmed: 22308031 ]