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sample_name:"30S" AND electron_source:"FIELD EMISSION GUN" AND software_ft:"CRYOSPARC"
Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
Release date: Feb. 19, 2025
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 8vio
Q-score: 0.486
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 8vio
Q-score: 0.486
Majumdar S, Kashyap A, Koripella RK, Sharma MR, Hurst-Hess K, Manjari SR, Banavali NK, Ghosh P, Agrawal RK
PNAS (2025) 122 pp. e2419826122-e2419826122 [ DOI: doi:10.1073/pnas.2419826122 Pubmed: 39913204 ]
Sample:
- Conserved domain protein (4 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l24 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l19 (12 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l6 (19 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s15 (10 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l9 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l15 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s9 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s17 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l2 (30 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s12 (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s2 (30 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l37 (2 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s8 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- E-trna (24 kDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l23 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 5s ribosomal rna (38 kDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l33 (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Gtpase hflx (50 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l10 (18 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 16s ribosomal rna (495 kDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l28 (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l4 (22 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Mycobacterium smegmatis 70s ribosome bound to hflx-gmppcp complex (Complex from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s11 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l25 (22 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s16 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l22 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l35 (7 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 23s ribosomal rna (1 MDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s5 (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s18 (9 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l3 (23 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s6 (10 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l17 (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l11 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s10 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s14 (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l5 (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l27 (9 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l30 (7 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Damaged 70S ribosome with PrfH bound
Release date: Feb. 5, 2025
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 9mor
Q-score: 0.367
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 9mor
Q-score: 0.367
Tian Y, Li Q, Fatma S, Jiang J, Jin H, Zeng F, Huang RH
bioRxiv (2025) [ DOI: doi:10.1101/2025.01.09.632186 Pubmed: 39829893 ]
Sample:
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl27 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- Trna (Cellular component)
- Mrna (8 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- Damaged 70s with prfh (Complex from Escherichia coli)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- Peptide chain release factor h (26 kDa, Protein from Capnocytophaga gingivalis)
- Large ribosomal subunit protein bl17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl25 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
- Putative peptide chain release factor homolog (Cellular component)
- 30s (Complex)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
- 50s (Complex)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul18 (12 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- P-trna, e-trna (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Escherichia coli)
Damaged 70S ribosome with PrfH bound
Release date: Feb. 5, 2025
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 9mq4
Q-score: 0.462
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 9mq4
Q-score: 0.462
Tian Y, Li Q, Fatma S, Jiang J, Jin H, Zeng F, Huang RH
bioRxiv (2025) [ DOI: doi:10.1101/2025.01.09.632186 Pubmed: 39829893 ]
Sample:
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl27 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli 0.1197)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- Trna (Cellular component)
- Mrna (8 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- Damaged 70s with prfh (Complex from Escherichia coli)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl25 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
- Putative peptide chain release factor homolog (Cellular component)
- 30s (Complex)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
- 50s (Complex)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul18 (12 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- P-trna, e-trna (24 kDa, RNA from Escherichia coli)
- Peptide chain release factor h (26 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Escherichia coli)
SSU(head) structure derived from the SSU sample of the mitoribosome from T. gondii.
Release date: Dec. 11, 2024
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9fi8
Q-score: 0.269
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9fi8
Q-score: 0.269
Wang C, Kassem S, Rocha REO, Sun P, Nguyen TT, Kloehn J, Liu X, Brusini L, Bonavoglia A, Barua S, Boissier F, Lucia Del Cistia M, Peng H, Tang X, Xie F, Wang Z, Vadas O, Suo X, Hashem Y, Soldati-Favre D, Jia Y
Nat Commun (2024) 15 pp. 10689-10689 [ Pubmed: 39690155 DOI: doi:10.1038/s41467-024-55033-z ]
Sample:
- Acylphosphatase-like domain-containing protein (14 kDa, Protein from Toxoplasma gondii)
- Dna double-strand break repair rad50 atpase (40 kDa, Protein from Toxoplasma gondii)
- Ms33/ms27 (46 kDa, Protein from Toxoplasma gondii)
- Ssub-ssu (18 kDa, RNA from Toxoplasma gondii)
- Rna9-ssu (21 kDa, RNA from Toxoplasma gondii)
- Rna19-ssu (8 kDa, RNA from Toxoplasma gondii)
- Ssu head structure sample of the mitoribosome from t. gondii. (Complex from Toxoplasma gondii)
- Ribosomal protein s9, putative (17 kDa, Protein from Toxoplasma gondii)
- Ap2 domain transcription factor ap2ix-6 (20 kDa, Protein from Toxoplasma gondii)
- Ms158 (10 kDa, Protein from Toxoplasma gondii)
- Ulr22 (4 kDa, RNA from Toxoplasma gondii)
- Ulr23 (3 kDa, RNA from Toxoplasma gondii)
- Small ribosomal subunit protein ms35 mitochondrial conserved domain-containing protein (27 kDa, Protein from Toxoplasma gondii)
- Ms149 (10 kDa, Protein from Toxoplasma gondii)
- Ms159 (9 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein s14, putative (12 kDa, Protein from Toxoplasma gondii)
- Ms155 (14 kDa, Protein from Toxoplasma gondii)
- Ssud (18 kDa, RNA from Toxoplasma gondii)
- Ms152 (19 kDa, Protein from Toxoplasma gondii)
- Ms151 (17 kDa, Protein from Toxoplasma gondii)
- Ms157 (18 kDa, Protein from Toxoplasma gondii)
- Rna5-ssu (10 kDa, RNA from Toxoplasma gondii)
- Small ribosomal subunit protein ms29,ms29(dap3) (57 kDa, Protein from Toxoplasma gondii)
- Ms141 (82 kDa, Protein from Toxoplasma gondii)
- Ulr24 (5 kDa, RNA from Toxoplasma gondii)
- Rap domain-containing protein (66 kDa, Protein from Toxoplasma gondii)
- Us10m (26 kDa, Protein from Toxoplasma gondii)
- Ms161 (3 kDa, Protein from Toxoplasma gondii)
- 30s ribosomal protein s5, putative (49 kDa, Protein from Toxoplasma gondii)
SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii.
Release date: Dec. 11, 2024
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 9fia
Q-score: 0.353
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 9fia
Q-score: 0.353
Wang C, Kassem S, Rocha REO, Sun P, Nguyen TT, Kloehn J, Liu X, Brusini L, Bonavoglia A, Barua S, Boissier F, Lucia Del Cistia M, Peng H, Tang X, Xie F, Wang Z, Vadas O, Suo X, Hashem Y, Soldati-Favre D, Jia Y
Nat Commun (2024) 15 pp. 10689-10689 [ Pubmed: 39690155 DOI: doi:10.1038/s41467-024-55033-z ]
Sample:
- Rna13 (11 kDa, RNA from Toxoplasma gondii)
- Mitochondrial ribosomal protein, ms137 (102 kDa, Protein from Toxoplasma gondii)
- Unidentified peptide (954 Da, Protein from Toxoplasma gondii)
- 30s ribosomal protein s12, putative (66 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein s18, putative (84 kDa, Protein from Toxoplasma gondii)
- Url18 (9 kDa, RNA from Toxoplasma gondii)
- Unidentified peptide (1 kDa, Protein from Toxoplasma gondii)
- Ulr19 (7 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein, bs21m (28 kDa, Protein from Toxoplasma gondii)
- Lsu structure derived from the lsu sample of the mitoribosome from t. gondii. (4 MDa, Complex from Toxoplasma gondii)
- Ulr13 (1 kDa, RNA from Toxoplasma gondii)
- Unidentified peptide (1 kDa, Protein from Toxoplasma gondii)
- Unidentified peptide (1 kDa, Protein from Toxoplasma gondii)
- Ulr15 (873 Da, RNA from Toxoplasma gondii)
- Ssub (39 kDa, RNA from Toxoplasma gondii)
- Dnaj domain-containing protein (25 kDa, Protein from Toxoplasma gondii)
- Ulr17 (4 kDa, RNA from Toxoplasma gondii)
- Putative mitochondrial ribosomal protein s6-2 (19 kDa, Protein from Toxoplasma gondii)
- Mitochondrial ribosomal protein, ms47 (44 kDa, Protein from Toxoplasma gondii)
- Acylphosphatase-like domain-containing protein (27 kDa, Protein from Toxoplasma gondii)
- Unidentified peptide (2 kDa, Protein from Toxoplasma gondii)
- Mitochondrial ribosomal protein, ms156 (30 kDa, Protein from Toxoplasma gondii)
- Putative 30s ribosomal protein s15 (44 kDa, Protein from Toxoplasma gondii)
- Rna30 (9 kDa, RNA from Toxoplasma gondii)
- Rna5 (26 kDa, RNA from Toxoplasma gondii)
- Mitochondrial ribosomal protein, ms147 (34 kDa, Protein from Toxoplasma gondii)
- Mitochondrial ribosomal protein, ms145 (75 kDa, Protein from Toxoplasma gondii)
- Ulr21 (3 kDa, RNA from Toxoplasma gondii)
- Unidentified peptide (698 Da, Protein from Toxoplasma gondii)
- Unidentified peptide (1 kDa, Protein from Toxoplasma gondii)
- Mitochondrial ribosomal protein, ms23 (41 kDa, Protein from Toxoplasma gondii)
- 30s ribosomal protein s5, putative (127 kDa, Protein from Toxoplasma gondii)
- Ulr12 (1 kDa, RNA from Toxoplasma gondii)
- Chch domain-containing protein (16 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (168 kDa, Protein from Toxoplasma gondii)
- Pentatricopeptide repeat domain-containing protein (74 kDa, Protein from Toxoplasma gondii)
- Macro domain-containing protein (75 kDa, Protein from Toxoplasma gondii)
- Putative homeodomain containing protein (67 kDa, Protein from Toxoplasma gondii)
- Ssue (15 kDa, RNA from Toxoplasma gondii)
- Rna33 (22 kDa, RNA from Toxoplasma gondii)
- Ulr20 (1 kDa, RNA from Toxoplasma gondii)
- Ulr16 (4 kDa, RNA from Toxoplasma gondii)
- Mitochondrial ribosomal protein, ms26 (59 kDa, Protein from Toxoplasma gondii)
- Enoyl-coa hydratase/isomerase family protein (80 kDa, Protein from Toxoplasma gondii)
- Unidentified peptide (1 kDa, Protein from Toxoplasma gondii)
- Rna19 (10 kDa, RNA from Toxoplasma gondii)
- Rna17 (15 kDa, RNA from Toxoplasma gondii)
- Putative ribosomal protein s8 (14 kDa, Protein from Toxoplasma gondii)
- Mitochondrial ribosomal protein, ms140 (116 kDa, Protein from Toxoplasma gondii)
- Ssua (36 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein s11, putative (43 kDa, Protein from Toxoplasma gondii)
- Rna8 (34 kDa, RNA from Toxoplasma gondii)
- Unidentified peptide (2 kDa, Protein from Toxoplasma gondii)
- Ulr11 (2 kDa, RNA from Toxoplasma gondii)
- Putative 30s ribosomal protein s16 (19 kDa, Protein from Toxoplasma gondii)
- Unidentified peptide (4 kDa, Protein from Toxoplasma gondii)
- Unidentified peptide (869 Da, Protein from Toxoplasma gondii)
- Mitochondrial ribosomal protein, ms153 (28 kDa, Protein from Toxoplasma gondii)
- Mitochondrial ribosomal protein, ms144 (59 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein, us2m (18 kDa, Protein from Toxoplasma gondii)
- Rna15 (8 kDa, RNA from Toxoplasma gondii)
- Unidentified peptide (1 kDa, Protein from Toxoplasma gondii)
- Ulr14 (567 Da, RNA from Toxoplasma gondii)
- Ssuf (19 kDa, RNA from Toxoplasma gondii)
- Mitochondrial ribosomal protein, ms26 (51 kDa, Protein from Toxoplasma gondii)
- Putative ribosomal protein s17 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein, us2m (34 kDa, Protein from Toxoplasma gondii)
Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome (Composite Map)
Release date: Nov. 20, 2024
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 9e71
Q-score: 0.614
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 9e71
Q-score: 0.614
Nissley AJ, Shulgina Y, Kivimae RW, Downing BE, Penev PI, Banfield JF, Nayak DD, Cate JHD
To Be Published
Sample:
- Large ribosomal subunit protein ul29 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Parep1 domain containing protein (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el32 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el30 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es6 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Spermine (202 Da, Ligand)
- Large ribosomal subunit protein el18 (13 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el24 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul30 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- El42 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es1 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es4 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Ssu ribosomal protein s30e (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el14 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us5 (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 16s rrna (487 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 50s ribosomal protein l15e (22 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us4 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es17 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- As35 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Ssu ribosomal protein s26e (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el21 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul24 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 70s ribosome (Complex from Pyrobaculum calidifontis JCM 11548)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein el8 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el34 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul23 (9 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es27 (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul16 (19 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Lsu ribosomal protein l38e (7 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us2 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Es28 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el31 (10 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul3 (37 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul6 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein es19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul18 (23 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 50s subunit (Complex from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Dj-1/pfpi domain-containing protein (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Zinc ion (65 Da, Ligand)
- 30s subunit (Complex from Pyrobaculum calidifontis JCM 11548)
- 5s rrna (41 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el13 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us17 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small zinc finger protein hvo-2753-like zinc-binding pocket domain-containing protein (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el43 (11 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us10 (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us19 (18 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Water (18 Da, Ligand)
- Large ribosomal subunit protein ul15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul14 (15 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- 23s rrna (984 kDa, RNA from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el20 (8 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el40 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Ssu ribosomal protein s25e (12 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul13 (21 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul2 (26 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el37 (6 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein ul4 (31 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us3 (24 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us7 (25 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us12 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Small ribosomal subunit protein us13 (16 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
- Large ribosomal subunit protein el19 (17 kDa, Protein from Pyrobaculum calidifontis JCM 11548)
