Structure of the B. subtilis disome - collided 70S ribosome
Resolution: 5.45 Å
EM Method: Single-particle
Fitted PDBs: 7qh4
Q-score: 0.168
Saito K, Kratzat H, Campbell A, Buschauer R, Burroughs AM, Berninghausen O, Aravind L, Green R, Beckmann R, Buskirk AR
Nature (2022) 603 pp. 503-508 [ Pubmed: 35264790 DOI: doi:10.1038/s41586-022-04416-7 ]
- 30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis)
- Trna (24 kDa, RNA from Bacillus subtilis)
- 30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis)
- 16s rrna (503 kDa, RNA from Bacillus subtilis)
- 50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis)
- Ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l10 (18 kDa, Protein from Bacillus subtilis)
- 23s rrna (949 kDa, RNA from Bacillus subtilis)
- 5s rrna (38 kDa, RNA from Bacillus subtilis)
- 50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis)
- Collided ribosome of the disome structure (Complex from Bacillus subtilis)
- 50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l33 (5 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l11 (14 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis)
- 50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis)
- 30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis)
Structure of 70S ribosome from Lactococcus lactis
Resolution: 5.6 Å
EM Method: Single-particle
Fitted PDBs: 5myj
Q-score: 0.248
Franken LE, Oostergetel GT, Pijning T, Puri P, Arkhipova V, Boekema EJ, Poolman B, Guskov A
Nat Commun (2017) 8 pp. 722-722 [ Pubmed: 28959045 DOI: doi:10.1038/s41467-017-00718-x ]
- 50s ribosomal protein l15 (15 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l29 (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l24 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l34 (5 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l3 (21 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l23 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s20 (8 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s15 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l22 (12 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s21 (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s17 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l35 (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s5 (17 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l4 (22 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s13 (13 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s4 (23 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l2 (29 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l6 (19 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l18 (12 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l16 (15 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l20 (13 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s3 (24 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l27 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l36 (4 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s8 (14 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 23s ribosomal rna (938 kDa, RNA from Lactococcus lactis subsp. cremoris MG1363)
- 50s ribosomal protein l19 (13 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l32 (6 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l21 (11 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s7 (17 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s12 (15 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s11 (13 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l28 (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 16s ribosomal rna (497 kDa, RNA from Lactococcus lactis subsp. cremoris MG1363)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l13 (16 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l33 3 (5 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s16 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s2 (28 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s10 (11 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l5 (20 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 5s ribosomal rna (37 kDa, RNA from Lactococcus lactis subsp. cremoris MG1363)
- Ribosome hibernation promotion factor (21 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l30 (6 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s18 (9 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l14 (12 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s19 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s14 type z (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s6 (11 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 70s ribosome (Complex from Lactococcus lactis)
- 50s ribosomal protein l17 (14 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s9 (14 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)
Resolution: 5.16 Å
EM Method: Single-particle
Fitted PDBs: 5no3
Q-score: 0.228
Lopez-Alonso JP, Kaminishi T, Kikuchi T, Hirata Y, Iturrioz I, Dhimole N, Schedlbauer A, Hase Y, Goto S, Kurita D, Muto A, Zhou S, Naoe C, Mills DJ, Gil-Carton D, Takemoto C, Himeno H, Fucini P, Connell SR
Nucleic Acids Res (2017) 45 pp. 6945-6959 [ DOI: doi:10.1093/nar/gkx324 Pubmed: 28482099 ]
- 30s ribosomal protein s7 (14 kDa, Protein from Escherichia coli (strain K12))
- Small ribosomal subunit biogenesis gtpase rsga (34 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s6 (12 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein s18 (6 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s12 (1 kDa, Protein from Escherichia coli (strain K12))
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli (strain K12))
- 30s ribosomal subunit bound by rsga (Complex from Escherichia coli (strain K12))
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli (strain K12))
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)
Resolution: 5.16 Å
EM Method: Single-particle
Fitted PDBs: 5no4
Q-score: 0.199
Lopez-Alonso JP, Kaminishi T, Kikuchi T, Hirata Y, Iturrioz I, Dhimole N, Schedlbauer A, Hase Y, Goto S, Kurita D, Muto A, Zhou S, Naoe C, Mills DJ, Gil-Carton D, Takemoto C, Himeno H, Fucini P, Connell SR
Nucleic Acids Res (2017) 45 pp. 6945-6959 [ DOI: doi:10.1093/nar/gkx324 Pubmed: 28482099 ]
- 30s ribosomal protein s7 (14 kDa, Protein from Escherichia coli (strain K12))
- Small ribosomal subunit biogenesis gtpase rsga (34 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal subunit bound by rsga (Complex from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s6 (12 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein s18 (6 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s12 (1 kDa, Protein from Escherichia coli (strain K12))
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli (strain K12))
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli (strain K12))
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)
Resolution: 5.16 Å
EM Method: Single-particle
Fitted PDBs: 5no2
Q-score: 0.246
Lopez-Alonso JP, Kaminishi T, Kikuchi T, Hirata Y, Iturrioz I, Dhimole N, Schedlbauer A, Hase Y, Goto S, Kurita D, Muto A, Zhou S, Naoe C, Mills DJ, Gil-Carton D, Takemoto C, Himeno H, Fucini P, Connell SR
Nucleic Acids Res (2017) 45 pp. 6945-6959 [ DOI: doi:10.1093/nar/gkx324 Pubmed: 28482099 ]
- 30s ribosomal protein s7 (14 kDa, Protein from Escherichia coli (strain K12))
- Small ribosomal subunit biogenesis gtpase rsga (34 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal subunit bound by rsga (Complex from Escherichia coli K12)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s6 (12 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein s18 (6 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s12 (1 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli (strain K12))
Graf M, Arenz S, Huter P, Donhofer A, Novacek J, Wilson DN
Nucleic Acids Res (2017) 45 pp. 2887-2896 [ Pubmed: 27986857 DOI: doi:10.1093/nar/gkw1272 ]
Resolution: 5.34 Å
EM Method: Single-particle
Fitted PDBs: 5jbh
Q-score: 0.117
Coureux PD, Lazennec-Schurdevin C, Monestier A, Larquet E, Cladiere L, Klaholz BP, Schmitt E, Mechulam Y
Nat Commun (2016) 7 pp. 13366-13366 [ Pubmed: 27819266 DOI: doi:10.1038/ncomms13366 ]
- 30s ribosomal protein us9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 16s ribosomal rna (492 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein us15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein sx (4 kDa, Protein from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein us12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- Aif2-beta (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein us3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Aif1a (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es4 (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es27 (5 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (8 kDa, RNA from Pyrococcus)
- 30s ribosomal protein es19 (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein ul30 (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (982 kDa, Complex)
- Aif2-alpha (30 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Aif2-gamma (45 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein es17 (7 kDa, Protein from Pyrococcus abyssi GE5)
- Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
- Aif1 (11 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- 30s ribosomal protein us19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us14 (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (Complex from Escherichia coli)
- 30s ribosomal protein es28 (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (Complex from Pyrococcus)
- 30s ribosomal protein es6 (14 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein es8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es24 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es27 (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us3 (22 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein el41 (3 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us4 (21 kDa, Protein from Pyrococcus abyssi GE5)
Resolution: 5.34 Å
EM Method: Single-particle
Fitted PDBs: 5jb3
Q-score: 0.164
Coureux PD, Lazennec-Schurdevin C, Monestier A, Larquet E, Cladiere L, Klaholz BP, Schmitt E, Mechulam Y
Nat Commun (2016) 7 pp. 13366-13366 [ Pubmed: 27819266 DOI: doi:10.1038/ncomms13366 ]
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 16s ribosomal rna (493 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein sx (4 kDa, Protein from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (7 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (8 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (982 kDa, Complex)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
- Methionine (149 Da, Ligand)
- 30s ribosomal protein s17p (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (6 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 2 subunit alpha (30 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 2 subunit gamma (45 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 2 subunit beta (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein el41 (3 kDa, Protein from Pyrococcus abyssi GE5)
- Protein translation factor sui1 homolog (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Resolution: 5.3 Å
EM Method: Single-particle
Fitted PDBs: 5lzb
Q-score: 0.22
Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schroder GF, Grubmuller H, Ficner R, Rodnina MV, Stark H
Nature (2016) 540 pp. 80-85 [ DOI: doi:10.1038/nature20560 Pubmed: 27842381 ]
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- Sec-trnasec (30 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- Secis mrna (15 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- Fmet-trnafmet (24 kDa, RNA from Escherichia coli)
- Selenocysteine-specific elongation factor (68 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- Cca 3' end of e-site trnasec (low occupancy) (894 Da, RNA from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- Initial binding state of e. coli ribosome 70s-selb-gdpnp-sec-trnasec-fmet-trnafmet-secis mrna complex (ib) (2 MDa, Complex from Escherichia coli)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- N-formylmethionine (177 Da, Ligand)
- Selenocysteine (168 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)