PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7p7r
Q-score: -0.017
Crowe-McAuliffe C, Murina V, Turnbull KJ, Huch S, Kasari M, Takada H, Nersisyan L, Sundsfjord A, Hegstad K, Atkinson GC, Pelechano V, Wilson DN, Hauryliuk V
Nat Commun (2022) 13 pp. 1860-1860 [ Pubmed: 35387982 DOI: doi:10.1038/s41467-022-29274-9 ]
- 50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis V583)
- 30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 70s ribosome (2 MDa, Complex from Enterococcus faecalis)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Are-abc-f family resistance factor poxta (70 kDa, Complex from Enterococcus faecalis)
- Mrna (6 kDa, RNA from Enterococcus faecalis V583)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l1 (24 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l32-3 (6 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Are-abc-f family resistance factor poxta (67 kDa, Protein from Enterococcus faecalis V583)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Trna-fmet (24 kDa, RNA from Enterococcus faecalis V583)
- 30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 5s rrna (37 kDa, RNA from Enterococcus faecalis V583)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l33 3 (5 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Complex of poxta-eq2 bound to the 70s ribosome from e. faecalis (initiation complex), state i. (2 MDa, Complex)
- 50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Magnesium ion (24 Da, Ligand)
- Spectinomycin (332 Da, Ligand)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 16s rrna (504 kDa, RNA from Enterococcus faecalis V583)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 23s rrna (944 kDa, RNA from Enterococcus faecalis V583)
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
MultiBody Refinement of 70S Ribosome from Enterococcus faecalis
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6w6p
Q-score: 0.627
Murphy EL, Singh KV, Avila B, Kleffmann T, Gregory ST, Murray BE, Krause KL, Khayat R, Jogl G
Sci Rep (2020) 10 pp. 16301-16301 [ DOI: doi:10.1038/s41598-020-73199-6 Pubmed: 33004869 ]
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s3 (22 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l24 (10 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis OG1RF)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l28 (6 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s11 (12 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l16 (15 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s18 (7 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s13 (12 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis OG1RF)
- 16s rrna (501 kDa, RNA from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l23 (10 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis OG1RF)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l27 (8 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis OG1RF)
- 23s rrna (942 kDa, RNA from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l5 (19 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s17 (9 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis OG1RF)
- 70s ribosome (2 MDa, Complex from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s19 (8 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis OG1RF)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis OG1RF)
- 50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis OG1RF)
Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 6o8w
Q-score: 0.422
Murphy EL, Singh KV, Avila B, Kleffmann T, Gregory ST, Murray BE, Krause KL, Khayat R, Jogl G
Sci Rep (2020) 10 pp. 16301-16301 [ DOI: doi:10.1038/s41598-020-73199-6 Pubmed: 33004869 ]
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l28 (6 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- Enterococcus faecalis (2 MDa, Complex from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s3 (22 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s17 (9 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (6 kDa, Protein from Enterococcus faecalis)
- 50s subunit (941 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s13 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l17 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s19 (8 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l16 (15 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 16s rrna (493 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s18 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l23 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l24 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
- Trna (24 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- Mrna (1 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l25 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (8 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s11 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (19 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 6o8x
Q-score: 0.402
Murphy EL, Singh KV, Avila B, Kleffmann T, Gregory ST, Murray BE, Krause KL, Khayat R, Jogl G
Sci Rep (2020) 10 pp. 16301-16301 [ DOI: doi:10.1038/s41598-020-73199-6 Pubmed: 33004869 ]
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l28 (6 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 16s rrna (494 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- Enterococcus faecalis (2 MDa, Complex from Enterococcus faecalis)
- 23s rrna (941 kDa, RNA from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s3 (22 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s17 (9 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s13 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l17 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s19 (8 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l16 (15 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s18 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l23 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l24 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l25 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (8 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s11 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (19 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class03
Resolution: 4.14 Å
EM Method: Single-particle
Fitted PDBs: 6o8y
Q-score: 0.345
Murphy EL, Singh KV, Avila B, Kleffmann T, Gregory ST, Murray BE, Krause KL, Khayat R, Jogl G
Sci Rep (2020) 10 pp. 16301-16301 [ DOI: doi:10.1038/s41598-020-73199-6 Pubmed: 33004869 ]
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l28 (6 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 16s rrna (494 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- Enterococcus faecalis (2 MDa, Complex from Enterococcus faecalis)
- 23s rrna (941 kDa, RNA from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s3 (22 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s17 (9 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s13 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l17 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s19 (8 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l16 (15 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s18 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l23 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l24 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l25 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (8 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s11 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (19 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 6o90
Q-score: 0.428
Murphy EL, Singh KV, Avila B, Kleffmann T, Gregory ST, Murray BE, Krause KL, Khayat R, Jogl G
Sci Rep (2020) 10 pp. 16301-16301 [ DOI: doi:10.1038/s41598-020-73199-6 Pubmed: 33004869 ]
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l28 (6 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 16s rrna (494 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- Enterococcus faecalis (2 MDa, Complex from Enterococcus faecalis)
- 23s rrna (941 kDa, RNA from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s3 (22 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s17 (9 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s13 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l17 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s19 (8 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l16 (15 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s18 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l23 (10 kDa, Protein from Enterococcus faecalis)
- 4s rrna (37 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l24 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l25 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (8 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s11 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (19 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 6o8z
Q-score: 0.46
Murphy EL, Singh KV, Avila B, Kleffmann T, Gregory ST, Murray BE, Krause KL, Khayat R, Jogl G
Sci Rep (2020) 10 pp. 16301-16301 [ DOI: doi:10.1038/s41598-020-73199-6 Pubmed: 33004869 ]
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l28 (6 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 16s rrna (494 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- Enterococcus faecalis (2 MDa, Complex from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s3 (22 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s17 (9 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s13 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l17 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s19 (8 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l16 (15 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s18 (7 kDa, Protein from Enterococcus faecalis)
- 23s rrna (942 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l23 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l24 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l25 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (8 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s11 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (19 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6eri
Q-score: 0.514
Boerema AP, Aibara S, Paul B, Tobiasson V, Kimanius D, Forsberg BO, Wallden K, Lindahl E, Amunts A
Nat Plants (2018) 4 pp. 212-217 [ DOI: doi:10.1038/s41477-018-0129-6 Pubmed: 29610536 ]
- 50s ribosomal protein l17, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- Ribosome-recycling factor, chloroplastic (21 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l24, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s18, chloroplastic (6 kDa, Protein from Spinacia oleracea)
- 16s ribosomal rna (480 kDa, RNA from Spinacia oleracea)
- 30s ribosomal protein s20, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 23s ribosomal rna (911 kDa, RNA from Spinacia oleracea)
- 30s ribosomal protein s11, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s3, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- Ribosome-binding factor psrp1, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l23, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l31, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l29, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s7, chloroplastic (16 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s17, chloroplastic (9 kDa, Protein from Spinacia oleracea)
- Chloroplast ribosome in complex with rrf (Complex from Spinacia oleracea)
- 4.5s ribosomal rna (34 kDa, RNA from Spinacia oleracea)
- 50s ribosomal protein l9, chloroplastic (5 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l34, chloroplastic (6 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l27, chloroplastic (12 kDa, Protein from Spinacia oleracea)
- Bs1c (14 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l3, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein 5 alpha, chloroplastic (6 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l19, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s6 alpha, chloroplastic (12 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s4, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l13, chloroplastic (22 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s13, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s15, chloroplastic (8 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l2, chloroplastic (26 kDa, Protein from Spinacia oleracea)
- 5s ribosomal rna (38 kDa, RNA from Spinacia oleracea)
- 30s ribosomal protein s8, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l6, chloroplastic (19 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l15, chloroplastic (20 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s2, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l36, chloroplastic (4 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l22, chloroplastic (19 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l33, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l4, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l32, chloroplastic (5 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s14, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l35, chloroplastic (8 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s31, chloroplastic (4 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s19, chloroplastic (9 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l16, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s16, chloroplastic (9 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l28, chloroplastic (8 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l20, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l14, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l5, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l18, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s10 alpha, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s21, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein 6, chloroplastic (5 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s9, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s12, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l21, chloroplastic (18 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s5, chloroplastic (16 kDa, Protein from Spinacia oleracea)