Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112
Resolution: 13.5 Å
EM Method: Single-particle
Fitted PDBs: 5me0
Q-score: 0.07
Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil-Carton D, Gualerzi CO, Fucini P, Connell SR
Nucleic Acids Res (2017) 45 pp. 2179-2187 [ Pubmed: 27986852 DOI: doi:10.1093/nar/gkw1251 ]
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
- Fmet-trna (24 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-2 (97 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (17 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-3 (19 kDa, Protein from Geobacillus stearothermophilus)
- N-formylmethionine (177 Da, Ligand)
- 30s pre-initiation complex stalled by ge81112 (Complex from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-3 (16 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-1 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112
Resolution: 13.5 Å
EM Method: Single-particle
Fitted PDBs: 5me1
Q-score: 0.072
Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil-Carton D, Gualerzi CO, Fucini P, Connell SR
Nucleic Acids Res (2017) 45 pp. 2179-2187 [ Pubmed: 27986852 DOI: doi:10.1093/nar/gkw1251 ]
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
- 30s pre-initiation complex ic-2 stalled by ge81112 (Complex from Escherichia coli)
- Fmet-trna (24 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-2 (97 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (17 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-3 (19 kDa, Protein from Geobacillus stearothermophilus)
- N-formylmethionine (177 Da, Ligand)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-3 (16 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-1 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Structural aspects of RbfA action during small ribosomal subunit assembly.
Resolution: 12.5 Å
EM Method: Single-particle
Fitted PDBs: 2r1c, 2r1g
Q-score: 0.027
Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK
Mol Cell (2007) 28 pp. 434-445 [ DOI: doi:10.1016/j.molcel.2007.08.026 Pubmed: 17996707 ]
- Ribosome binding factor a (10 kDa, Protein from Thermus thermophilus HB8)
- 30s small ribosomal subunit (900 kDa, Complex from Thermus thermophilus HB8)
- Complex of ribosomal subunit 30s and rbfa (910 kDa, Sample)
Three-dimensional structures of translating ribosomes by Cryo-EM.
Gilbert RJ, Fucini P, Connell S, Fuller SD, Nierhaus KH, Robinson CV, Dobson CM, Stuart DI
Mol Cell (2004) 14 pp. 57-66 [ Pubmed: 15068803 DOI: doi:10.1016/S1097-2765(04)00163-7 ]
- 70s e. coli ribosome (2 MDa, Sample)
- E. coli 50s subunit (Complex from Escherichia coli)
- E. coli 30s subunit (Complex from Escherichia coli)
Three-dimensional structures of translating ribosomes by Cryo-EM.
Gilbert RJ, Fucini P, Connell S, Fuller SD, Nierhaus KH, Robinson CV, Dobson CM, Stuart DI
Mol Cell (2004) 14 pp. 57-66 [ Pubmed: 15068803 DOI: doi:10.1016/S1097-2765(04)00163-7 ]
- P site trna (RNA from Escherichia coli)
- E. coli 50s subunit (Complex from Escherichia coli)
- E. coli 30s subunit (Complex from Escherichia coli)
- 70s e. coli ribosome translating 1 ig domain (Sample)
- Ig domain of d. discoideum abp (Protein from Dictyostelium discoideum)
- E site trna (RNA from Escherichia coli)
Three-dimensional structures of translating ribosomes by Cryo-EM.
Gilbert RJ, Fucini P, Connell S, Fuller SD, Nierhaus KH, Robinson CV, Dobson CM, Stuart DI
Mol Cell (2004) 14 pp. 57-66 [ Pubmed: 15068803 DOI: doi:10.1016/S1097-2765(04)00163-7 ]
- P site trna (RNA from Escherichia coli)
- Tandem ig domains of d. discoideum abp (Protein from Dictyostelium discoideum)
- E. coli 50s subunit (Complex from Escherichia coli)
- E. coli 30s subunit (Complex from Escherichia coli)
- E site trna (RNA from Escherichia coli)
- E. coli ribosome translating 2 ig domains (Sample)