Structure of a ribosome with tethered subunits
Resolution: 4.18 Å
EM Method: Single-particle
Fitted PDBs: 7uph
Q-score: 0.24
Kim DS, Watkins A, Bidstrup E, Lee J, Topkar V, Kofman C, Schwarz KJ, Liu Y, Pintilie G, Roney E, Das R, Jewett MC
Nat Chem Biol (2022) 18 pp. 990-998 [ DOI: doi:10.1038/s41589-022-01064-w Pubmed: 35836020 ]
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
- Tethered rrna (1 MDa, RNA from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- Ribosome with tethered subunits (Complex from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 7zag
Q-score: 0.56
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ Pubmed: 35694843 DOI: doi:10.1093/nar/gkac490 ]
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 5b (69 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Rrna (487 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- Met-trnaimet, translation initiation factor 1a and translation initiation factor 5b (Complex from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- Met-trnaimet (24 kDa, RNA from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (8 kDa, RNA from Pyrococcus abyssi GE5)
- Water (18 Da, Ligand)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- Complex of 30s ribosomal subunit with initiation factor aif1a, the c-terminal domain of aif5b, mrna and trna (Complex)
- 30s and 50s ribosomal proteins (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA, aIF1A and aIF5B
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7zah
Q-score: 0.591
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ Pubmed: 35694843 DOI: doi:10.1093/nar/gkac490 ]
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (Complex from Pyrococcus abyssi GE5)
- Trna-met (24 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 5b (69 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi GE5)
- Initiation complex with 30s ribosomal subunit,trna, mrna and initiation factors 1a and 5b (Complex)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- Trna-met, translation initiation factor 1a and translation initiation factor 5b (Complex from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 16s rrna (487 kDa, RNA from Pyrococcus abyssi GE5)
- Water (18 Da, Ligand)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s and 50s ribosomal proteins (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s28e (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (7 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7zki
Q-score: 0.418
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ Pubmed: 35694843 DOI: doi:10.1093/nar/gkac490 ]
- Magnesium ion (24 Da, Ligand)
- Translation initiation factor 1a (15 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- Trna-aif5b-aif1a moiety of a pyrococcus abyssi translation initiation complex with 30s ribosomal subunit,trna, mrna and initiation factors 1a and 5b. (Complex)
- Translation initiation factor 5b (69 kDa, Protein from Pyrococcus abyssi GE5)
- Trna-met (Complex from Escherichia coli)
- Translation initiation factor 1a and probable translation initiation factor if-2 (Complex from Pyrococcus abyssi GE5)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Met-trnaimet (24 kDa, RNA from Escherichia coli)
Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A.
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7zai
Q-score: 0.587
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ Pubmed: 35694843 DOI: doi:10.1093/nar/gkac490 ]
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- Trna-met (24 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal subunit with initiation factor 1a, mrna and initiator trna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (8 kDa, RNA from Pyrococcus abyssi GE5)
- 16s rrna (487 kDa, RNA from Pyrococcus abyssi GE5)
- Water (18 Da, Ligand)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
Resolution: 2.25 Å
EM Method: Single-particle
Fitted PDBs: 7zhg
Q-score: 0.696
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ Pubmed: 35694843 DOI: doi:10.1093/nar/gkac490 ]
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (5 kDa, RNA from Pyrococcus abyssi GE5)
- Rrna 16s (487 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- Met-trnaimet (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- Water (18 Da, Ligand)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- High resolution 30s ribosomal subunit with a fragment of mrna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- High resolution 30s ribosomal subunit with a fragment of mrna and trna (Complex)
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- Met-trnaimet (24 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 7nbu
Q-score: 0.521
Mansour M, Giudice E, Xu X, Akarsu H, Bordes P, Guillet V, Bigot DJ, Slama N, D'urso G, Chat S, Redder P, Falquet L, Mourey L, Gillet R, Genevaux P
Nat Commun (2022) 13 pp. 2641-2641 [ DOI: doi:10.1038/s41467-022-30373-w Pubmed: 35552387 ]
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- E-site trna (Complex from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l9 (4 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l16,50s ribosomal protein l31 (16 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l16 (5 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- Cspa mrna (3 kDa, RNA from Mycobacterium tuberculosis H37Rv)
- 50s ribosomal proteins (Complex from Escherichia coli K-12)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli K-12)
- Probable endoribonuclease higb1 (14 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (17 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal subunit (Complex from Escherichia coli K-12)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- M. tuberculosis higb1_k95a mutant toxin and its target, the cspa mrna, on the e. coli ribosome. (Complex from Escherichia coli K-12)
- Higb1 toxin (Complex from Mycobacterium tuberculosis)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli K-12)
- P-site fmet-trna(fmet) (Complex from Escherichia coli K-12)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal proteins (Complex from Escherichia coli K-12)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli K-12)
- N-formylmethionine (177 Da, Ligand)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli K-12)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli K-12)
- E-site trna (589 Da, RNA from Escherichia coli K-12)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli K-12)
- 16s rrna (Complex from Escherichia coli K-12)
- Cspa mrna (Complex from Escherichia coli K-12)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli K-12)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- P-site fmet-trna(fmet) (24 kDa, RNA from Escherichia coli K-12)
- 23s and 5s rrna (Complex from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal subunit (Complex from Escherichia coli K-12)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli K-12)
Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7boe
Q-score: 0.391
Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR
Sci Adv (2021) 7 [ Pubmed: 34088665 DOI: doi:10.1126/sciadv.abf7547 ]
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli (strain K12))
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
- 16s rrna (499 kDa, RNA from Escherichia coli (strain K12))
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli (strain K12))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli (strain K12))
- Complete bacterial 30s ribosomal subunit assembly complex state m (consensus refinement) (Complex from Escherichia coli (strain K12))
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli (strain K12))
Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 7boh
Q-score: 0.442
Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR
Sci Adv (2021) 7 [ Pubmed: 34088665 DOI: doi:10.1126/sciadv.abf7547 ]
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli (strain K12))
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli (strain K12))
- Complete bacterial 30s ribosomal subunit assembly (Complex from Escherichia coli (strain K12))
- 30s ribosome-binding factor (15 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosome-binding factor (Complex from Escherichia coli (strain K12))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli (strain K12))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
- Rna (1527-mer) (499 kDa, RNA from Escherichia coli (strain K12))
- Complete bacterial 30s ribosomal subunit assembly complex state e (+rbfa) (consensus refinement) (Complex)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli (strain K12))
Complete Bacterial 30S ribosomal subunit assembly complex state F (+RsgA)(Consensus Refinement)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7nar
Q-score: 0.435
Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR
Sci Adv (2021) 7 [ Pubmed: 34088665 DOI: doi:10.1126/sciadv.abf7547 ]
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli (strain K12))
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
- 16s rrna (499 kDa, RNA from Escherichia coli (strain K12))
- Complete bacterial 30s ribosomal subunit assembly complex state f (+rsga)(consensus refinement) (Complex)
- Small ribosomal subunit biogenesis gtpase rsga (39 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli (strain K12))
- Small ribosomal subunit biogenesis gtpase rsga (Complex from Escherichia coli (strain K12))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
- Bacterial 30s ribosomal subunit assembly (Complex from Escherichia coli (strain K12))
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli (strain K12))