PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7p7r
Q-score: -0.017
Crowe-McAuliffe C, Murina V, Turnbull KJ, Huch S, Kasari M, Takada H, Nersisyan L, Sundsfjord A, Hegstad K, Atkinson GC, Pelechano V, Wilson DN, Hauryliuk V
Nat Commun (2022) 13 pp. 1860-1860 [ Pubmed: 35387982 DOI: doi:10.1038/s41467-022-29274-9 ]
- 50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis V583)
- 30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 70s ribosome (2 MDa, Complex from Enterococcus faecalis)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Are-abc-f family resistance factor poxta (70 kDa, Complex from Enterococcus faecalis)
- Mrna (6 kDa, RNA from Enterococcus faecalis V583)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l1 (24 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l32-3 (6 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Are-abc-f family resistance factor poxta (67 kDa, Protein from Enterococcus faecalis V583)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Trna-fmet (24 kDa, RNA from Enterococcus faecalis V583)
- 30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 5s rrna (37 kDa, RNA from Enterococcus faecalis V583)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l33 3 (5 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Complex of poxta-eq2 bound to the 70s ribosome from e. faecalis (initiation complex), state i. (2 MDa, Complex)
- 50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- Magnesium ion (24 Da, Ligand)
- Spectinomycin (332 Da, Ligand)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 16s rrna (504 kDa, RNA from Enterococcus faecalis V583)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 23s rrna (944 kDa, RNA from Enterococcus faecalis V583)
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
- 30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
Mtb 70SIC in complex with MtbEttA at Trans_R1 state
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7msz
Q-score: 0.52
Cui Z, Li X, Shin J, Gamper H, Hou YM, Sacchettini JC, Zhang J
Nat Commun (2022) 13 pp. 432-432 [ DOI: doi:10.1038/s41467-022-28078-1 Pubmed: 35064151 ]
- 5s rrna (37 kDa, RNA from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l4 (23 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l17 (19 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s18 1 (9 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l37 (2 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l33 2 (6 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l1 (24 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s5 (22 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- N-formylmethionine (177 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s16 (17 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s19 (10 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s14 type z (6 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s11 (14 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l23 (10 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l13 (21 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l19 (13 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s13 (14 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- Vanadate ion (114 Da, Ligand)
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 16s rrna (498 kDa, RNA from Mycobacterium tuberculosis H37Rv)
- 50s ribosomal protein l22 (20 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l27 (8 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- The complex of mtb 70sic with mtbetta at atp-hydrolysis transition state (trans_r1) (Complex from Mycobacterium tuberculosis H37Rv)
- 50s ribosomal protein l9 (16 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s17 (14 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- Energy-dependent translational throttle protein etta (61 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- Mrna (8 kDa, RNA from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l28 (6 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s3 (30 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s9 (16 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- Initiator trna (met) (24 kDa, RNA from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
- 23s rrna (1 MDa, RNA from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)
Resolution: 9.5 Å
EM Method: Single-particle
Fitted PDBs: 7pju
Q-score: 0.143
Petrychenko V, Peng BZ, de A P Schwarzer AC, Peske F, Rodnina MV, Fischer N
Nat Commun (2021) 12 pp. 5933-5933 [ DOI: doi:10.1038/s41467-021-26133-x Pubmed: 34635670 ]
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli (strain K12))
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli (strain K12))
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s6, fully modified isoform (15 kDa, Protein from Escherichia coli (strain K12))
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli (strain K12))
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli (strain K12))
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli (strain K12))
- Ribosomal protein l11 (14 kDa, Protein from Escherichia coli (strain K12))
- P-site fmet-phe-trna(phe) (24 kDa, RNA from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli (strain K12))
- P-site trna(fmet) (24 kDa, RNA from Escherichia coli (strain K12))
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli (strain K12))
- Dipeptide (fme-phe) (324 Da, Protein from Escherichia coli (strain K12))
- 16s ribosomal rna (499 kDa, RNA from Escherichia coli (strain K12))
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
- Ribosomal protein l24 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli (strain K12))
- Apramycin (539 Da, Ligand)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli (strain K12))
- E. coli ribosome complex 70s-apr-ef-g-gdp-pi-fmet-phe-trnaphe-trna-fmet-mrna (Complex from Escherichia coli (strain K12))
- Ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli (strain K12))
- Ribosomal protein l22 (12 kDa, Protein from Escherichia coli (strain K12))
- Mrna (10 kDa, RNA from Escherichia coli (strain K12))
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli (strain K12))
Structure of post-translocated trans-translation complex on E. coli stalled ribosome.
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 7acr
Q-score: 0.38
Guyomar C, D'Urso G, Chat S, Giudice E, Gillet R
Nat Commun (2021) 12 pp. 4909-4909 [ DOI: doi:10.1038/s41467-021-24881-4 Pubmed: 34389707 ]
- Ssra-binding protein (17 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli K-12)
- Transfer-messenger rna (tmrna) (117 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- Structure of post-translocated trans-translation complex on e. coli stalled ribosome. (Complex)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli K-12)
- Ssra-binding protein (Complex from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli K-12)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli K-12)
- Nascent peptide (236 Da, Protein from Escherichia coli K-12)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli K-12)
- Tmrna (Complex from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli K-12)
- Ribosome (Complex from Escherichia coli (strain K12))
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli K-12)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s2 (25 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli K-12)
Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7nso
Q-score: 0.551
Beckert B, Leroy EC, Sothiselvam S, Bock LV, Svetlov MS, Graf M, Arenz S, Abdelshahid M, Seip B, Grubmuller H, Mankin AS, Innis CA, Vazquez-Laslop N, Wilson DN
Nat Commun (2021) 12 pp. 4466-4466 [ Pubmed: 34294725 DOI: doi:10.1038/s41467-021-24674-9 ]
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- Ermdl (877 Da, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- Structure of ermdl-erythromycin-stalled 70s e. coli ribosomal complex with p-trna (Complex from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- Erythromycin a (733 Da, Ligand)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 23s rrna (2903-mer) (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- Ptrna-leu (28 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 16s rrna (1540-mer) (499 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- Mrna (872 Da, RNA from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7nhk
Q-score: 0.519
Crowe-McAuliffe C, Murina V, Turnbull KJ, Kasari M, Mohamad M, Polte C, Takada H, Vaitkevicius K, Johansson J, Ignatova Z, Atkinson GC, O'Neill AJ, Hauryliuk V, Wilson DN
Nat Commun (2021) 12 pp. 3577-3577 [ DOI: doi:10.1038/s41467-021-23753-1 Pubmed: 34117249 ]
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis)
- Trna-fmeti (24 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l1 (24 kDa, Protein from Enterococcus faecalis)
- 23s rrna (944 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- 16s rrna (504 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- Lsaa-in complex with 70s ribosome, mrna, and trna (2 MDa, Complex from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- Rna (5'-r(p*gp*gp*ap*gp*gp*up*ap*up*gp*ap*cp*ap*a)-3') (5 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis)
- Abc-f type ribosomal protection protein lsa(a) (62 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis)
VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7nhl
Q-score: 0.476
Crowe-McAuliffe C, Murina V, Turnbull KJ, Kasari M, Mohamad M, Polte C, Takada H, Vaitkevicius K, Johansson J, Ignatova Z, Atkinson GC, O'Neill AJ, Hauryliuk V, Wilson DN
Nat Commun (2021) 12 pp. 3577-3577 [ DOI: doi:10.1038/s41467-021-23753-1 Pubmed: 34117249 ]
- Potassium ion (39 Da, Ligand)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Vgaa-lc in complex with 70s ribosome, mrna, and distorted p-trna from staphylococcus aureus (2 MDa, Complex)
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 5s rrna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 70s ribosome (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Rna (5'-r(p*gp*gp*ap*gp*gp*up*ap*up*g)-3') (4 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- P-trna fmet (24 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 23s rrna (946 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 16s rrna (501 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Vgaa-lc (Complex from Staphylococcus haemolyticus)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Lincosamide-streptogramin a resistance protein (63 kDa, Protein from Staphylococcus haemolyticus)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
70S ribosome from Staphylococcus aureus
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7nhm
Q-score: 0.494
Crowe-McAuliffe C, Murina V, Turnbull KJ, Kasari M, Mohamad M, Polte C, Takada H, Vaitkevicius K, Johansson J, Ignatova Z, Atkinson GC, O'Neill AJ, Hauryliuk V, Wilson DN
Nat Commun (2021) 12 pp. 3577-3577 [ DOI: doi:10.1038/s41467-021-23753-1 Pubmed: 34117249 ]
- Potassium ion (39 Da, Ligand)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Rna (5'-r(p*gp*gp*ap*gp*gp*up*np*np*np*np*np*np*ap*up*g)-3') (4 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 5s rrna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- N-formylmethionine (177 Da, Ligand)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 23s rrna (946 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 16s rrna (501 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 70s ribosome from staphylococcus aureus (2 MDa, Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Trna-fmet (24 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7nhn
Q-score: 0.534
Crowe-McAuliffe C, Murina V, Turnbull KJ, Kasari M, Mohamad M, Polte C, Takada H, Vaitkevicius K, Johansson J, Ignatova Z, Atkinson GC, O'Neill AJ, Hauryliuk V, Wilson DN
Nat Commun (2021) 12 pp. 3577-3577 [ DOI: doi:10.1038/s41467-021-23753-1 Pubmed: 34117249 ]
- 50s ribosomal protein l3 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 16s rrna (499 kDa, RNA from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s18 (9 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l18 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l28 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s12 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 23s rrna (949 kDa, RNA from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l36 (4 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s19 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s10 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 5s rrna (36 kDa, RNA from Listeria monocytogenes EGD-E)
- Vgal in complex with 70s ribosome, mrna, and distorted p-trna from listeria monocytogenes (2 MDa, Complex from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s5 (17 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s6 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l17 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l24 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s2 (28 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s15 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l2 (30 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s9 (14 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l15 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 50s ribosomal protein l20 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l22 (12 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l32-2 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s11 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l16 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s7 (17 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s20 (9 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l19 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l6 (19 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s8 (14 kDa, Protein from Listeria monocytogenes EGD-e)
- Spermidine (145 Da, Ligand)
- Trna-fmet (24 kDa, RNA from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l5 (20 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s4 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l4 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s17 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l23 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- Rna (5'-r(p*gp*ap*gp*gp*up*np*np*np*np*np*np*ap*up*g)-3') (3 kDa, RNA from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s16 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l21 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l27 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l13 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s13 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- Lmo0919 protein (64 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s3 (24 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l35 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l34 (5 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l14 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l29 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l30 (6 kDa, Protein from Listeria monocytogenes EGD-e)
The structure of the small subunit of the mitoribosome from Neurospora crassa
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 6yw5
Q-score: 0.592
Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A
Nat Commun (2020) 11 pp. 5187-5187 [ Pubmed: 33056988 DOI: doi:10.1038/s41467-020-18830-w ]
- Potassium ion (39 Da, Ligand)
- Mito ribosomal protein s4 (51 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein s15 (35 kDa, Protein from Neurospora crassa OR74A)
- Us2m (51 kDa, Protein from Neurospora crassa OR74A)
- Ms27 (44 kDa, Protein from Neurospora crassa OR74A)
- Ms26 (35 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa OR74A)
- Ms47 (10 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s6 (13 kDa, Protein from Neurospora crassa OR74A)
- If1 (23 kDa, Protein from Neurospora crassa OR74A)
- Us9m (35 kDa, Protein from Neurospora crassa OR74A)
- Igr domain-containing protein (26 kDa, Protein from Neurospora crassa OR74A)
- Fe superoxide dismutase (34 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein s16, mitochondrial (12 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s5 (53 kDa, Protein from Neurospora crassa OR74A)
- 40s ribosomal protein s8 (17 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s18 (28 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein s5, mitochondrial (58 kDa, Protein from Neurospora crassa OR74A)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa OR74A)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ms33 (12 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein subunit s18 (42 kDa, Protein from Neurospora crassa OR74A)
- 16s rrna (600 kDa, RNA from Neurospora crassa OR74A)
- 37s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial 40s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa OR74A)
- Ms42 (39 kDa, Protein from Neurospora crassa OR74A)
- Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa OR74A)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein s19 (10 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s21 (25 kDa, Protein from Neurospora crassa OR74A)
- Ms46 (43 kDa, Protein from Neurospora crassa OR74A)
- 40s ribosomal protein s13 (13 kDa, Protein from Neurospora crassa OR74A)
- Mitoribosome of neurospora crassa (Complex from Neurospora crassa OR74A)
- Mitochondrial 37s ribosomal protein s17 (18 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial 30s ribosomal protein s12 (18 kDa, Protein from Neurospora crassa OR74A)