43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7ase
Q-score: 0.314
Bochler A, Querido JB, Prilepskaja T, Soufari H, Simonetti A, Del Cistia ML, Kuhn L, Ribeiro AR, Valasek LS, Hashem Y
Cell Rep (2020) 33 pp. 108534-108534 [ Pubmed: 33357443 DOI: doi:10.1016/j.celrep.2020.108534 ]
- Eif3a (87 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s19, putative (18 kDa, Protein from Trypanosoma cruzi)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 40s ribosomal protein s2, putative (28 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 (eif-3) interacting protein, putative (56 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s13, putative (17 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s15, putative (17 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s18, putative (17 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s8 (25 kDa, Protein from Trypanosoma cruzi)
- Guanine nucleotide-binding protein subunit beta-like protein (35 kDa, Protein from Trypanosoma cruzi)
- Initiator trna-met (24 kDa, RNA from Trypanosoma cruzi)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Trypanosoma cruzi)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s7 (24 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s17, putative (16 kDa, Protein from Trypanosoma cruzi)
- Translation initiation factor, putative (38 kDa, Protein from Trypanosoma cruzi)
- El41 (4 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s23, putative (15 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s12 (15 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s3a-2 (29 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s3, putative (24 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s24 (15 kDa, Protein from Trypanosoma cruzi)
- Csn8_psd8_eif3k domain-containing protein (22 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s27, putative (9 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s30 (7 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 5, putative (42 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein sa (27 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s6 (28 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s11, putative (20 kDa, Protein from Trypanosoma cruzi)
- Rna-binding protein, putative (27 kDa, Protein from Trypanosoma cruzi)
- Elongation initiation factor 2 alpha subunit, putative (47 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s26 (12 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit e (46 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s33 (10 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s29, putative (6 kDa, Protein from Trypanosoma cruzi)
- Putative 40s ribosomal protein s21 (27 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 2 subunit, putative (52 kDa, Protein from Trypanosoma cruzi)
- Kddx60 (246 kDa, Protein from Trypanosoma cruzi)
- 43s preinitiation complex from trypanosoma cruzi with the helicase kddx60 (Complex from Trypanosoma cruzi)
- 40s ribosomal protein s15a, putative (16 kDa, Protein from Trypanosoma cruzi)
- Eif3h (38 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit 7-like protein, putative (57 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s4 (30 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s20, putative (13 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s5, putative (21 kDa, Protein from Trypanosoma cruzi)
- 18s (746 kDa, RNA from Trypanosoma cruzi)
- 40s ribosomal protein s14, putative (15 kDa, Protein from Trypanosoma cruzi)
- Protein translation factor sui1 homolog, putative (12 kDa, Protein from Trypanosoma cruzi)
- Jab_mpn domain-containing protein (38 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s16, putative (16 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s10, putative (18 kDa, Protein from Trypanosoma cruzi)
- 60s ribosomal protein l40 (16 kDa, Protein from Trypanosoma cruzi)
- Putative eukaryotic translation initiation factor 1a (18 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit 8, putative (82 kDa, Protein from Trypanosoma cruzi)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s25 (12 kDa, Protein from Trypanosoma cruzi)
Structure of the plant mitochondrial ribosome
Resolution: 3.86 Å
EM Method: Single-particle
Fitted PDBs: 6xyw
Q-score: 0.359
Waltz F, Soufari H, Bochler A, Giege P, Hashem Y
Nat Plants (2020) 6 pp. 377-383 [ Pubmed: 32251374 DOI: doi:10.1038/s41477-020-0631-5 ]
- At1g26740/t24p13_11 (14 kDa, Protein from Arabidopsis thaliana)
- At3g51010 (21 kDa, Protein from Arabidopsis thaliana)
- Pentatricopeptide repeat-containing protein at3g02650, mitochondrial (63 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein l24 (17 kDa, Protein from Arabidopsis thaliana)
- At3g06320 (6 kDa, Protein from Arabidopsis thaliana)
- Unk-4 (2 kDa, Protein from Arabidopsis thaliana)
- Uncharacterized protein (22 kDa, Protein from Arabidopsis thaliana)
- Rna (2842-mer) (918 kDa, RNA from Arabidopsis thaliana)
- 50s ribosomal protein l3-2, mitochondrial (35 kDa, Protein from Arabidopsis thaliana)
- At4g31460/f3l17_30 (24 kDa, Protein from Arabidopsis thaliana)
- 60s ribosomal protein l2, mitochondrial (37 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein s2, mitochondrial (24 kDa, Protein from Arabidopsis thaliana)
- 40s ribosomal protein s15a-5 (14 kDa, Protein from Arabidopsis thaliana)
- At4g35490 (16 kDa, Protein from Arabidopsis thaliana)
- 37s ribosomal protein s27 (11 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein l25/gln-trna synthetase, anti-codon-binding domain-containing protein (27 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein l9/rnase h1 (25 kDa, Protein from Arabidopsis thaliana)
- 39s ribosomal protein (14 kDa, Protein from Arabidopsis thaliana)
- Rppr* (24 kDa, Protein from Arabidopsis thaliana)
- At1g64880 (60 kDa, Protein from Arabidopsis thaliana)
- At1g07830/f24b9_7 (16 kDa, Protein from Arabidopsis thaliana)
- Probable ribosomal protein s11, mitochondrial (33 kDa, Protein from Arabidopsis thaliana)
- Adenylyl cyclase (43 kDa, Protein from Arabidopsis thaliana)
- 30s ribosomal protein s31, mitochondrial (10 kDa, Protein from Arabidopsis thaliana)
- Translation elongation factor ef1b/ribosomal protein s6 family protein (15 kDa, Protein from Arabidopsis thaliana)
- The large mitoribosomal subunit of the plant mitoribosome (Complex from Arabidopsis thaliana)
- 3-hydroxyisobutyryl-coa hydrolase-like protein 2, mitochondrial (45 kDa, Protein from Arabidopsis thaliana)
- 30s ribosomal protein s16-2, chloroplastic/mitochondrial (15 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein l20 (14 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein l10 (19 kDa, Protein from Arabidopsis thaliana)
- Pentatricopeptide repeat-containing protein at1g60770 (55 kDa, Protein from Arabidopsis thaliana)
- 60s ribosomal protein l16, mitochondrial (20 kDa, Protein from Arabidopsis thaliana)
- At4g05400 (27 kDa, Protein from Arabidopsis thaliana)
- Rna (1743-mer) (564 kDa, RNA from Arabidopsis thaliana)
- At1g01640 (23 kDa, Protein from Arabidopsis thaliana)
- At1g14620/t5e21_15 (27 kDa, Protein from Arabidopsis thaliana)
- F10k1.8 protein (29 kDa, Protein from Arabidopsis thaliana)
- Unk-3 (4 kDa, Protein from Arabidopsis thaliana)
- 28s ribosomal s34 protein (15 kDa, Protein from Arabidopsis thaliana)
- Cx9c domain-containing protein (10 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein s12, mitochondrial (14 kDa, Protein from Arabidopsis thaliana)
- At5g27820 (12 kDa, Protein from Arabidopsis thaliana)
- Pentatricopeptide repeat-containing protein pnm1, mitochondrial (59 kDa, Protein from Arabidopsis thaliana)
- At1g24240/f3i6_17 (25 kDa, Protein from Arabidopsis thaliana)
- At1g73940/f2p9_19 (17 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein hlp, mitochondrial (18 kDa, Protein from Arabidopsis thaliana)
- At4g39880 (19 kDa, Protein from Arabidopsis thaliana)
- 30s ribosomal protein s9, mitochondrial (48 kDa, Protein from Arabidopsis thaliana)
- At1g15810/f7h2_23 (47 kDa, Protein from Arabidopsis thaliana)
- 60s ribosomal protein l5, mitochondrial (21 kDa, Protein from Arabidopsis thaliana)
- Putative ribosomal protein l6 (11 kDa, Protein from Arabidopsis thaliana)
- Ms38 (15 kDa, Protein from Arabidopsis thaliana)
- At2g34520 (18 kDa, Protein from Arabidopsis thaliana)
- At5g26800 (12 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein l31 (8 kDa, Protein from Arabidopsis thaliana)
- 40s ribosomal protein s10, mitochondrial (27 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein l18e/l15 superfamily protein (31 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein l4 (33 kDa, Protein from Arabidopsis thaliana)
- Rppr* (47 kDa, Protein from Arabidopsis thaliana)
- 40s ribosomal protein s19, mitochondrial (23 kDa, Protein from Arabidopsis thaliana)
- Ms31/ms46 (8 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein l27 (16 kDa, Protein from Arabidopsis thaliana)
- At5g40080 (10 kDa, Protein from Arabidopsis thaliana)
- At5g09770 (18 kDa, Protein from Arabidopsis thaliana)
- Rppr* (22 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein l21, mitochondrial (30 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein s4, mitochondrial (43 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein s3, mitochondrial (64 kDa, Protein from Arabidopsis thaliana)
- Uncharacterized protein at1g27435/f17l21.30 (8 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein (11 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein s21 family protein (11 kDa, Protein from Arabidopsis thaliana)
- Small ribosomal subunit protein s13, mitochondrial (17 kDa, Protein from Arabidopsis thaliana)
- Gb|aac32909.1 (48 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein l35 (20 kDa, Protein from Arabidopsis thaliana)
- Nucleic acid-binding, ob-fold-like protein (12 kDa, Protein from Arabidopsis thaliana)
- At4g22000 (15 kDa, Protein from Arabidopsis thaliana)
- At3g18240 protein (48 kDa, Protein from Arabidopsis thaliana)
- At1g52370 protein (30 kDa, Protein from Arabidopsis thaliana)
- At5g55140 (12 kDa, Protein from Arabidopsis thaliana)
- Unk-5 (6 kDa, Protein from Arabidopsis thaliana)
- Rna (118-mer) (37 kDa, RNA from Arabidopsis thaliana)
- Rppr* (18 kDa, Protein from Arabidopsis thaliana)
- Unk-2 (5 kDa, Protein from Arabidopsis thaliana)
- Unk-1 (4 kDa, Protein from Arabidopsis thaliana)
- Unk-6 (2 kDa, Protein from Arabidopsis thaliana)
- At5g49210/k21p3_8 (23 kDa, Protein from Arabidopsis thaliana)
- Expressed protein (22 kDa, Protein from Arabidopsis thaliana)
- Mitochondrial ribosomal protein l51/s25/ci-b8 family protein (16 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein s7, mitochondrial (17 kDa, Protein from Arabidopsis thaliana)
- Mitochondrial 28s ribosomal protein s29-like protein (53 kDa, Protein from Arabidopsis thaliana)
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6gq1
Q-score: 0.357
Pellegrino S, Demeshkina N, Mancera-Martinez E, Melnikov S, Simonetti A, Myasnikov A, Yusupov M, Yusupova G, Hashem Y
J Mol Biol (2018) 430 pp. 2677-2687 [ DOI: doi:10.1016/j.jmb.2018.06.006 Pubmed: 29886014 ]
- 60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
- Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s17-b (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l22-a (11 kDa, Protein from Baker's yeast)
- [1r-(1.alpha.,3a.beta.,4.beta.,4a.beta.,7.beta.,7a.alpha.,8a.beta.)]8a-[(6-deoxy-4-o-methyl-beta-d-altropyranosyloxy)methyl]-4-formyl-4,4a,5,6,7,7a,8,8a-octahydro-7-methyl-3-(1-methylethyl)-1,4-methano-s-indacene-3a(1h)-carboxylic acid (494 Da, Ligand)
- 40s ribosomal protein s18-a (16 kDa, Protein from Baker's yeast)
- 80s ribosome (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l25 (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
- Rna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l8-a (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l2-a (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s29-a (6 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l24-a (7 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s10-a (12 kDa, Protein from Baker's yeast)
- Saccharomyces cerevisiae s288c 35s pre-ribosomal rna (rdn37-1), miscrna (1 MDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin-40s ribosomal protein s31 (4 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l30 (10 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l12-a (10 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s14-b (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s28-a (7 kDa, Protein from Baker's yeast)
- 5s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from Baker's yeast)
- 5.8s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (19 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s21-a (9 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s11-a (17 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s12 (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s1-a (24 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s9-a (21 kDa, Protein from Baker's yeast)
- Messenger rna (2 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l43-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
- 60s acidic ribosomal protein p0 (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s13 (16 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s20 (12 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s0-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s19-a (15 kDa, Protein from Baker's yeast)
- Elongation factor 2 (93 kDa, Protein from Baker's yeast)
- 80s ribosome in complex with mrna, trna and eef2 in presence of non-hydrolizable gtp (gmppcp) and anti-fungal drug (sordarin) (3 MDa, Complex)
- 40s ribosomal protein s15 (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s5 (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l42-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l34-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s3 (24 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s2 (23 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s23-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s6-a (25 kDa, Protein from Baker's yeast)
- Transfer rna - phe (24 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l11-b (19 kDa, Protein from Baker's yeast)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l41-b (3 kDa, Protein from Baker's yeast)
- 18s ribosomal rna (578 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l14-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s30-a (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s26-b (11 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l10 (25 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s25-a (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6gqb
Q-score: 0.386
Pellegrino S, Demeshkina N, Mancera-Martinez E, Melnikov S, Simonetti A, Myasnikov A, Yusupov M, Yusupova G, Hashem Y
J Mol Biol (2018) 430 pp. 2677-2687 [ DOI: doi:10.1016/j.jmb.2018.06.006 Pubmed: 29886014 ]
- 60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
- 18s ribosomal rna (578 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s18-a (16 kDa, Protein from Baker's yeast)
- 80s ribosome (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l25 (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (25 kDa, Protein from Baker's yeast)
- Mrna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l2-a (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s29-a (6 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s10-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from Baker's yeast)
- Ubiquitin-40s ribosomal protein s31 (4 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s14-b (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s21-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s11-a (17 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l30 (10 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s12 (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s9-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s1-a (24 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l43-a (9 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s15 (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l1-a (22 kDa, Protein from Baker's yeast)
- 60s acidic ribosomal protein p0 (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s13 (16 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s20 (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l24-a (7 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s0-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s19-a (15 kDa, Protein from Baker's yeast)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Tetrafluoroaluminate ion (102 Da, Ligand)
- [1r-(1.alpha.,3a.beta.,4.beta.,4a.beta.,7.beta.,7a.alpha.,8a.beta.)]8a-[(6-deoxy-4-o-methyl-beta-d-altropyranosyloxy)methyl]-4-formyl-4,4a,5,6,7,7a,8,8a-octahydro-7-methyl-3-(1-methylethyl)-1,4-methano-s-indacene-3a(1h)-carboxylic acid (494 Da, Ligand)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 80s ribosome in complex with mrna, trna and eef2 in presence of gdp, alf4 and anti-fungal drug (sordarin) (3 MDa, Complex)
- 40s ribosomal protein s5 (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l42-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l34-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l22-a (11 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s23-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s6-a (25 kDa, Protein from Baker's yeast)
- Transfer rna - phe (24 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- Elongation factor 2 (93 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s26-b (11 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (19 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l41-b (3 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l11-b (19 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l14-a (14 kDa, Protein from Baker's yeast)
- Saccharomyces cerevisiae s288c 35s pre-ribosomal rna (rdn37-1), miscrna (1 MDa, RNA from Baker's yeast)
- 40s ribosomal protein s3 (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l12-a (10 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s30-a (6 kDa, Protein from Baker's yeast)
- Messenger rna (2 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (25 kDa, Protein from Baker's yeast)
- 5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s28-a (7 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s2 (23 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s17-b (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l10 (25 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s25-a (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6gqv
Q-score: 0.378
Pellegrino S, Demeshkina N, Mancera-Martinez E, Melnikov S, Simonetti A, Myasnikov A, Yusupov M, Yusupova G, Hashem Y
J Mol Biol (2018) 430 pp. 2677-2687 [ DOI: doi:10.1016/j.jmb.2018.06.006 Pubmed: 29886014 ]
- 80s ribosome (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s3 (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s1-a (24 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l25 (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s14-b (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (25 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s0-a (22 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l1-a (22 kDa, Protein from Baker's yeast)
- 5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s6-a (25 kDa, Protein from Baker's yeast)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s26-b (11 kDa, Protein from Baker's yeast)
- Transfer rna - phe (24 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s11-a (17 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
- Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s19-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s15 (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s30-a (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s29-a (6 kDa, Protein from Baker's yeast)
- Ubiquitin-40s ribosomal protein s31 (4 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l12-a (10 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s23-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s28-a (7 kDa, Protein from Baker's yeast)
- 80s ribosome in complex with mrna, trna and eef2 in presence of non-hydrolyzable gtp (gmppcp) (Complex)
- 40s ribosomal protein s12 (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s13 (16 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l11-b (19 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s10-a (12 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s20 (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l41-b (3 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l22-a (11 kDa, Protein from Baker's yeast)
- Elongation factor 2 (92 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
- 18s ribosomal rna (578 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- Messenger rna (2 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l2-a (27 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s21-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l10 (25 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s2 (23 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- 60s acidic ribosomal protein p0 (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (19 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s17-b (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s18-a (16 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l30 (10 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (25 kDa, Protein from Baker's yeast)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l14-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s5 (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l34-a (12 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s25-a (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l24-a (7 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l42-a (12 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 60s ribosomal protein l43-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from Baker's yeast)
- Mrna (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 5opt
Q-score: 0.284
Brito Querido J, Mancera-Martinez E, Vicens Q, Bochler A, Chicher J, Simonetti A, Hashem Y
Structure (2017) 25 pp. 1785-1794.e3 [ Pubmed: 29107485 DOI: doi:10.1016/j.str.2017.09.014 ]
- 40s ribosomal protein s2, putative (28 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s15, putative (17 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s13, putative (17 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s33, putative (12 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s26 (12 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s24 (15 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 80s ribosome from trypanosoma cruzi (Complex from Trypanosoma cruzi)
- Activated protein kinase c receptor, putative (35 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s18, putative (17 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s14, putative (15 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ribosomal protein s29, putative (6 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s15a, putative (14 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s9, putative (22 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s27, putative (9 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s16, putative (16 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s3a-2 (29 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s8 (25 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s17, putative (22 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s21, putative (26 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ubiquitin/ribosomal protein s27a, putative (16 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein sa (27 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ribosomal protein s25, putative (12 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Rna-binding protein, putative (27 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s4 (30 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s12 (15 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 18s rrna (746 kDa, RNA from Trypanosoma cruzi)
- 40s ribosomal protein s6 (28 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s11, putative (20 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ribosomal protein s20, putative (13 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s3, putative (24 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s10, putative (18 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ribosomal protein s19, putative (18 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s30 (7 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s23, putative (15 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ribosomal protein s7, putative (24 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s5, putative (21 kDa, Protein from Trypanosoma cruzi (strain CL Brener))