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sample_name:"40S ribosomal protein S18-A" AND author_name:"Matsuo Y"
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Yeast SDD1 Disome with Mbf1

Release date: Dec. 4, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9f9s
Q-score: 0.54

Kim KQ, Li JJ, Nanjaraj Urs AN, Pacheco ME, Lasehinde V, Denk T, Tesina P, Tomomatsu S, Matsuo Y, McDonald E, Beckmann R, Inada T, Green R, Zaher HS

Mol Cell (2024) 84 pp. 4594- [ Pubmed: 39566505 DOI: doi:10.1016/j.molcel.2024.10.029 ]

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Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Release date: May 24, 2023
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8cah
Q-score: 0.43

Ikeuchi K, Ivic N, Buschauer R, Cheng J, Frohlich T, Matsuo Y, Berninghausen O, Inada T, Becker T, Beckmann R

Nat Commun (2023) 14 pp. 2730-2730 [ Pubmed: 37169754 DOI: doi:10.1038/s41467-023-38161-w ]

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Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Release date: May 24, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8cas
Q-score: 0.366

Ikeuchi K, Ivic N, Buschauer R, Cheng J, Frohlich T, Matsuo Y, Berninghausen O, Inada T, Becker T, Beckmann R

Nat Commun (2023) 14 pp. 2730-2730 [ Pubmed: 37169754 DOI: doi:10.1038/s41467-023-38161-w ]

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Yeast cytoplasmic pre-40S ribosome biogenesis complex with deubiquitinating enzyme Otu2

Release date: May 24, 2023
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8cbj
Q-score: 0.263

Ikeuchi K, Ivic N, Buschauer R, Cheng J, Frohlich T, Matsuo Y, Berninghausen O, Inada T, Becker T, Beckmann R

Nat Commun (2023) 14 pp. 2730-2730 [ Pubmed: 37169754 DOI: doi:10.1038/s41467-023-38161-w ]

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Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Release date: Feb. 22, 2023
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 7zpq
Q-score: 0.522

Best K, Ikeuchi K, Kater L, Best D, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

Nat Commun (2023) 14 pp. 921-921 [ DOI: doi:10.1038/s41467-023-36230-8 Pubmed: 36801861 ]

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Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Release date: Feb. 22, 2023
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7zrs
Q-score: 0.49

Best K, Ikeuchi K, Kater L, Best D, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

Nat Commun (2023) 14 pp. 921-921 [ DOI: doi:10.1038/s41467-023-36230-8 Pubmed: 36801861 ]

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Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Release date: Feb. 22, 2023
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7zuw
Q-score: 0.447

Best K, Ikeuchi K, Kater L, Best D, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

Nat Commun (2023) 14 pp. 921-921 [ DOI: doi:10.1038/s41467-023-36230-8 Pubmed: 36801861 ]

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Collided ribosome in a disome unit from S. cerevisiae

Release date: Feb. 22, 2023
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7zux
Q-score: 0.516

Best K, Ikeuchi K, Kater L, Best D, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

Nat Commun (2023) 14 pp. 921-921 [ DOI: doi:10.1038/s41467-023-36230-8 Pubmed: 36801861 ]

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FAP-80S Complex - Rotated state

Release date: Oct. 5, 2022
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7zw0
Q-score: 0.603

Li S, Ikeuchi K, Kato M, Buschauer R, Sugiyama T, Adachi S, Kusano H, Natsume T, Berninghausen O, Matsuo Y, Becker T, Beckmann R, Inada T

Mol Cell (2022) 82 pp. 3424-3437.e8 [ Pubmed: 36113412 DOI: doi:10.1016/j.molcel.2022.08.018 ]

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yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Release date: April 22, 2020
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6tb3
Q-score: 0.543

Buschauer R, Matsuo Y, Sugiyama T, Chen YH, Alhusaini N, Sweet T, Ikeuchi K, Cheng J, Matsuki Y, Nobuta R, Gilmozzi A, Berninghausen O, Tesina P, Becker T, Coller J, Inada T, Beckmann R

Science (2020) 368 [ DOI: doi:10.1126/science.aay6912 Pubmed: 32299921 ]

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