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sample_name:"40S ribosomal protein S24" AND author_name:"Matsuo Y"
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Yeast SDD1 Disome with Mbf1

Release date: Dec. 4, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9f9s
Q-score: 0.54

Kim KQ, Li JJ, Nanjaraj Urs AN, Pacheco ME, Lasehinde V, Denk T, Tesina P, Tomomatsu S, Matsuo Y, McDonald E, Beckmann R, Inada T, Green R, Zaher HS

Mol Cell (2024) 84 pp. 4594- [ Pubmed: 39566505 DOI: doi:10.1016/j.molcel.2024.10.029 ]

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Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex - body 1

Release date: May 24, 2023
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8c83
Q-score: 0.441

Ikeuchi K, Ivic N, Buschauer R, Cheng J, Frohlich T, Matsuo Y, Berninghausen O, Inada T, Becker T, Beckmann R

Nat Commun (2023) 14 pp. 2730-2730 [ DOI: doi:10.1038/s41467-023-38161-w Pubmed: 37169754 ]

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Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Release date: May 24, 2023
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8cah
Q-score: 0.43

Ikeuchi K, Ivic N, Buschauer R, Cheng J, Frohlich T, Matsuo Y, Berninghausen O, Inada T, Becker T, Beckmann R

Nat Commun (2023) 14 pp. 2730-2730 [ Pubmed: 37169754 DOI: doi:10.1038/s41467-023-38161-w ]

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Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Release date: May 24, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8cas
Q-score: 0.366

Ikeuchi K, Ivic N, Buschauer R, Cheng J, Frohlich T, Matsuo Y, Berninghausen O, Inada T, Becker T, Beckmann R

Nat Commun (2023) 14 pp. 2730-2730 [ Pubmed: 37169754 DOI: doi:10.1038/s41467-023-38161-w ]

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Yeast cytoplasmic pre-40S ribosome biogenesis complex with deubiquitinating enzyme Otu2

Release date: May 24, 2023
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8cbj
Q-score: 0.263

Ikeuchi K, Ivic N, Buschauer R, Cheng J, Frohlich T, Matsuo Y, Berninghausen O, Inada T, Becker T, Beckmann R

Nat Commun (2023) 14 pp. 2730-2730 [ Pubmed: 37169754 DOI: doi:10.1038/s41467-023-38161-w ]

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Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Release date: Feb. 22, 2023
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 7zpq
Q-score: 0.522

Best K, Ikeuchi K, Kater L, Best D, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

Nat Commun (2023) 14 pp. 921-921 [ DOI: doi:10.1038/s41467-023-36230-8 Pubmed: 36801861 ]

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Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Release date: Feb. 22, 2023
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7zrs
Q-score: 0.49

Best K, Ikeuchi K, Kater L, Best D, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

Nat Commun (2023) 14 pp. 921-921 [ DOI: doi:10.1038/s41467-023-36230-8 Pubmed: 36801861 ]

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Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Release date: Feb. 22, 2023
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7zuw
Q-score: 0.447

Best K, Ikeuchi K, Kater L, Best D, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

Nat Commun (2023) 14 pp. 921-921 [ DOI: doi:10.1038/s41467-023-36230-8 Pubmed: 36801861 ]

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Collided ribosome in a disome unit from S. cerevisiae

Release date: Feb. 22, 2023
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7zux
Q-score: 0.516

Best K, Ikeuchi K, Kater L, Best D, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

Nat Commun (2023) 14 pp. 921-921 [ DOI: doi:10.1038/s41467-023-36230-8 Pubmed: 36801861 ]

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Human collided disome (di-ribosome) stalled on XBP1 mRNA

Release date: Oct. 12, 2022
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7qvp
Q-score: 0.449

Narita M, Denk T, Matsuo Y, Sugiyama T, Kikuguchi C, Ito S, Sato N, Suzuki T, Hashimoto S, Machova I, Tesina P, Beckmann R, Inada T

Nat Commun (2022) 13 pp. 6411-6411 [ DOI: doi:10.1038/s41467-022-34097-9 Pubmed: 36302773 ]

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