Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6zv6
Q-score: 0.468
Plassart L, Shayan R, Montellese C, Rinaldi D, Larburu N, Pichereaux C, Froment C, Lebaron S, O'Donohue MF, Kutay U, Marcoux J, Gleizes PE, Plisson-Chastang C
eLife (2021) 10 [ DOI: doi:10.7554/eLife.61254 Pubmed: 33908345 ]
- 40s ribosomal protein s28 (7 kDa, Protein from Human)
- 40s ribosomal protein s17 (15 kDa, Protein from Human)
- Serine/threonine-protein kinase rio1 (65 kDa, Protein from Human)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein sa (32 kDa, Protein from Human)
- 40s ribosomal protein s5 (22 kDa, Protein from Human)
- 40s ribosomal protein s21 (9 kDa, Protein from Human)
- 40s ribosomal protein s19 (16 kDa, Protein from Human)
- 40s ribosomal protein s3 (26 kDa, Protein from Human)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s29 (6 kDa, Protein from Human)
- 40s ribosomal protein s25 (13 kDa, Protein from Human)
- 40s ribosomal protein s10 (18 kDa, Protein from Human)
- 40s ribosomal protein s6 (28 kDa, Protein from Human)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Human)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Human)
- 40s ribosomal protein s18 (17 kDa, Protein from Human)
- 40s ribosomal protein s20 (13 kDa, Protein from Human)
- 40s ribosomal protein s16 (16 kDa, Protein from Human)
- 40s ribosomal protein s12 (14 kDa, Protein from Human)
- 40s ribosomal protein s23 (15 kDa, Protein from Human)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Human)
- 40s ribosomal protein s9 (22 kDa, Protein from Human)
- 40s ribosomal protein s26 (13 kDa, Protein from Human)
- 40s ribosomal protein s8 (24 kDa, Protein from Human)
- 40s ribosomal protein s3a (30 kDa, Protein from Human)
- 40s ribosomal protein s27 (9 kDa, Protein from Human)
- 40s ribosomal protein s15 (17 kDa, Protein from Human)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Human)
- 18s ribosomal rna (602 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Human)
- Human cytoplasmic late precursor to the small ribosomal subunit, purified using rio1(kd)-stha as bait. structural state b (post 18s rrna maturation) (1 MDa, Complex from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Human)
- 40s ribosomal protein s7 (22 kDa, Protein from Human)
- 40s ribosomal protein s13 (17 kDa, Protein from Human)
- 40s ribosomal protein s11 (18 kDa, Protein from Human)
- 40s ribosomal protein s14 (16 kDa, Protein from Human)
- 40s ribosomal protein s2 (31 kDa, Protein from Human)
McGilvray PT, Anghel SA, Sundaram A, Zhong F, Trnka MJ, Fuller JR, Hu H, Burlingame AL, Keenan RJ
eLife (2020) 9 [ DOI: doi:10.7554/eLife.56889 Pubmed: 32820719 ]
- Translocon (Complex from Homo sapiens)
- 60s ribosomal protein l36 (Complex from Homo sapiens)
- 40s ribosomal protein s15a (Complex from Homo sapiens)
- 40s ribosomal protein s28 (Complex from Homo sapiens)
- 40s ribosomal protein s21 (Complex from Homo sapiens)
- 40s ribosomal protein s12 (Complex from Homo sapiens)
- 60s ribosomal protein l17 (Complex from Homo sapiens)
- 60s ribosomal protein l35 (Complex from Homo sapiens)
- 40s ribosomal protein s7 (Complex from Homo sapiens)
- 40s ribosomal protein s29 (Complex from Homo sapiens)
- 60s ribosomal protein l39 (Complex from Homo sapiens)
- 60s ribosomal protein l13a (Complex from Homo sapiens)
- 60s ribosomal protein l26 (Complex from Homo sapiens)
- 60s ribosomal protein l9 (Complex from Homo sapiens)
- 40s ribosomal protein s10 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p0 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p1 (Complex from Homo sapiens)
- 60s ribosomal protein l24 (Complex from Homo sapiens)
- 40s ribosomal protein s4, x isoform (Complex from Homo sapiens)
- 40s ribosomal protein s6 (Complex from Homo sapiens)
- 40s ribosomal protein s27-like (Complex from Homo sapiens)
- 60s ribosomal protein l31 (Complex from Homo sapiens)
- 40s ribosomal protein s16 (Complex from Homo sapiens)
- 40s ribosomal protein s26 (Complex from Homo sapiens)
- Sec61 complex (70 kDa, Complex from Homo sapiens)
- 60s ribosomal protein l28 (Complex from Homo sapiens)
- 40s ribosomal protein s19 (Complex from Homo sapiens)
- 40s ribosomal protein s2 (Complex from Homo sapiens)
- 60s ribosomal protein l18a (Complex from Homo sapiens)
- 60s ribosomal protein l5 (Complex from Homo sapiens)
- 40s ribosomal protein s18 (Complex from Homo sapiens)
- 60s ribosomal protein l15 (Complex from Homo sapiens)
- 40s ribosomal protein s23 (Complex from Homo sapiens)
- 60s ribosomal protein l10a (Complex from Homo sapiens)
- 60s ribosomal protein l19 (Complex from Homo sapiens)
- 40s ribosomal protein s24 (Complex from Homo sapiens)
- 60s ribosomal protein l4 (Complex from Homo sapiens)
- 40s ribosomal protein s5 (Complex from Homo sapiens)
- 60s ribosomal protein l37a (Complex from Homo sapiens)
- 60s ribosomal protein l30 (Complex from Homo sapiens)
- 60s ribosomal protein l36a (Complex from Homo sapiens)
- 60s ribosomal protein l7 (Complex from Homo sapiens)
- 40s ribosomal protein s3 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p2 (Complex from Homo sapiens)
- 60s ribosomal protein l11 (Complex from Homo sapiens)
- Native complex of a translating ribosome and a novel translocon containing the sec61 complex, tmem147, nomo, nicalin, ccdc47, and tmco1. (56 kDa, Complex from Homo sapiens)
- 60s ribosomal protein l23 (Complex from Homo sapiens)
- 60s ribosomal protein l35a (Complex from Homo sapiens)
- 40s ribosomal protein s11 (Complex from Homo sapiens)
- 40s subunit (1 MDa, Complex from Homo sapiens)
- 60s ribosomal protein l14 (Complex from Homo sapiens)
- 40s ribosomal protein s3a (Complex from Homo sapiens)
- 60s ribosomal protein l13 (Complex from Homo sapiens)
- 40s ribosomal protein s17 (Complex from Homo sapiens)
- 40s ribosomal protein sa (Complex from Homo sapiens)
- 60s ribosomal protein l38 (Complex from Homo sapiens)
- 40s ribosomal protein s9 (Complex from Homo sapiens)
- 60s ribosomal protein l32 (Complex from Homo sapiens)
- 60s ribosomal protein l8 (Complex from Homo sapiens)
- 40s ribosomal protein s25 (Complex from Homo sapiens)
- 60s ribosomal protein l27a (Complex from Homo sapiens)
- 40s ribosomal protein s13 (Complex from Homo sapiens)
- 60s ribosomal protein l23a (Complex from Homo sapiens)
- 60s ribosomal protein l3 (Complex from Homo sapiens)
- 60s ribosomal protein l22 (Complex from Homo sapiens)
- Nomo-nicalin-tmem147 complex (Complex from Homo sapiens)
- 40s ribosomal protein s15 (Complex from Homo sapiens)
- 40s ribosomal protein s14 (Complex from Homo sapiens)
- 60s ribosomal protein l6 (Complex from Homo sapiens)
- 60s ribosomal protein l34 (Complex from Homo sapiens)
- Tmco1 (Complex from Homo sapiens)
- 60s ribosomal protein l12 (Complex from Homo sapiens)
- 60s ribosomal protein l18 (Complex from Homo sapiens)
- 60s ribosomal protein l27 (Complex from Homo sapiens)
- 40s ribosomal protein s8 (Complex from Homo sapiens)
- 60s ribosomal protein l7a (Complex from Homo sapiens)
- 60s subunit (2 MDa, Complex from Homo sapiens)
- 40s ribosomal protein s30 (Complex from Homo sapiens)
- 40s ribosomal protein s27 (Complex from Homo sapiens)
- 60s ribosomal protein l10 (Complex from Homo sapiens)
- Ccdc47 (Complex from Homo sapiens)
- 60s ribosomal protein l21 (Complex from Homo sapiens)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6w6l
Q-score: 0.291
McGilvray PT, Anghel SA, Sundaram A, Zhong F, Trnka MJ, Fuller JR, Hu H, Burlingame AL, Keenan RJ
eLife (2020) 9 [ Pubmed: 32820719 DOI: doi:10.7554/eLife.56889 ]
- 60s subunit (2 MDa, Complex from Homo sapiens)
- 40s ribosomal protein s3 (Complex from Homo sapiens)
- 40s ribosomal protein s4, x isoform (Complex from Homo sapiens)
- 40s ribosomal protein s27 (Complex from Homo sapiens)
- 60s ribosomal protein l30 (Complex from Homo sapiens)
- 40s ribosomal protein s24 (Complex from Homo sapiens)
- 60s ribosomal protein l18 (Complex from Homo sapiens)
- 60s ribosomal protein l35a (Complex from Homo sapiens)
- 60s ribosomal protein l7a (Complex from Homo sapiens)
- 60s ribosomal protein l13 (Complex from Homo sapiens)
- 60s ribosomal protein l21 (Complex from Homo sapiens)
- 60s ribosomal protein l11 (Complex from Homo sapiens)
- 40s subunit (1 MDa, Complex from Homo sapiens)
- 40s ribosomal protein s28 (Complex from Homo sapiens)
- 60s ribosomal protein l8 (Complex from Homo sapiens)
- 60s ribosomal protein l19 (Complex from Homo sapiens)
- 40s ribosomal protein s11 (Complex from Homo sapiens)
- 40s ribosomal protein s9 (Complex from Homo sapiens)
- 60s ribosomal protein l28 (Complex from Homo sapiens)
- 40s ribosomal protein s19 (Complex from Homo sapiens)
- 40s ribosomal protein s21 (Complex from Homo sapiens)
- 60s ribosomal protein l13a (Complex from Homo sapiens)
- Tmco1 (21 kDa, Complex from Homo sapiens)
- 60s ribosomal protein l39 (Complex from Homo sapiens)
- 40s ribosomal protein s14 (Complex from Homo sapiens)
- 40s ribosomal protein s15a (Complex from Homo sapiens)
- 60s ribosomal protein l12 (Complex from Homo sapiens)
- 40s ribosomal protein s18 (Complex from Homo sapiens)
- 40s ribosomal protein s25 (Complex from Homo sapiens)
- 60s ribosomal protein l36a (Complex from Homo sapiens)
- 40s ribosomal protein s10 (Complex from Homo sapiens)
- 60s ribosomal protein l23 (Complex from Homo sapiens)
- 60s ribosomal protein l26 (Complex from Homo sapiens)
- 60s ribosomal protein l36 (Complex from Homo sapiens)
- 40s ribosomal protein s20 (Complex from Homo sapiens)
- 40s ribosomal protein s7 (Complex from Homo sapiens)
- 60s ribosomal protein l14 (Complex from Homo sapiens)
- 60s ribosomal protein l38 (Complex from Homo sapiens)
- 60s ribosomal protein l17 (Complex from Homo sapiens)
- 60s ribosomal protein l24 (Complex from Homo sapiens)
- Translocon (376 kDa, Complex from Homo sapiens)
- 60s ribosomal protein l34 (Complex from Homo sapiens)
- 60s ribosomal protein l37a (Complex from Homo sapiens)
- 60s ribosomal protein l27a (Complex from Homo sapiens)
- 60s ribosomal protein l5 (Complex from Homo sapiens)
- 40s ribosomal protein s16 (Complex from Homo sapiens)
- 60s ribosomal protein l32 (Complex from Homo sapiens)
- Sec61 complex (70 kDa, Complex from Homo sapiens)
- 40s ribosomal protein s17 (Complex from Homo sapiens)
- 60s ribosomal protein l7 (Complex from Homo sapiens)
- 60s ribosomal protein l10a (Complex from Homo sapiens)
- 40s ribosomal protein s12 (Complex from Homo sapiens)
- 40s ribosomal protein s2 (Complex from Homo sapiens)
- 40s ribosomal protein s6 (Complex from Homo sapiens)
- 40s ribosomal protein s23 (Complex from Homo sapiens)
- Native complex of a translating ribosome and a novel translocon containing the sec61 complex, tmem147, nomo, nicalin, ccdc47, and tmco1. (3 MDa, Complex from Homo sapiens)
- 40s ribosomal protein s13 (Complex from Homo sapiens)
- 60s ribosomal protein l9 (Complex from Homo sapiens)
- 60s ribosomal protein l6 (Complex from Homo sapiens)
- 40s ribosomal protein s5 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p0 (Complex from Homo sapiens)
- 40s ribosomal protein s3a (Complex from Homo sapiens)
- 60s ribosomal protein l10 (Complex from Homo sapiens)
- 40s ribosomal protein s27-like (Complex from Homo sapiens)
- 60s acidic ribosomal protein p2 (Complex from Homo sapiens)
- 60s ribosomal protein l31 (Complex from Homo sapiens)
- 60s ribosomal protein l27 (Complex from Homo sapiens)
- 40s ribosomal protein s15 (Complex from Homo sapiens)
- Nomo-nicalin-tmem147 complex (228 kDa, Complex from Homo sapiens)
- 60s acidic ribosomal protein p1 (Complex from Homo sapiens)
- 60s ribosomal protein l35 (Complex from Homo sapiens)
- 60s ribosomal protein l3 (Complex from Homo sapiens)
- 40s ribosomal protein s26 (Complex from Homo sapiens)
- 40s ribosomal protein s8 (Complex from Homo sapiens)
- 60s ribosomal protein l23a (Complex from Homo sapiens)
- 60s ribosomal protein l22 (Complex from Homo sapiens)
- 40s ribosomal protein s29 (Complex from Homo sapiens)
- 60s ribosomal protein l18a (Complex from Homo sapiens)
- 60s ribosomal protein l4 (Complex from Homo sapiens)
- Ccdc47 (56 kDa, Complex from Homo sapiens)
- 40s ribosomal protein s30 (Complex from Homo sapiens)
- 60s ribosomal protein l15 (Complex from Homo sapiens)
- 40s ribosomal protein sa (Complex from Homo sapiens)