The structure of human Pdcd4 bound to the 40S small ribosomal subunit
Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Du Y, Albacete-Albacete L, Ramakrishnan V, Fraser CS
Nat Commun (2024) 15 pp. 6633-6633 [ DOI: doi:10.1038/s41467-024-50672-8 Pubmed: 39117603 ]
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Spermidine (145 Da, Ligand)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es30 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Programmed cell death protein 4 (51 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
- 18s rrna (555 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosome bound to pdcd4 (1 MDa, Complex from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Du Y, Albacete-Albacete L, Ramakrishnan V, Fraser CS
Nat Commun (2024) 15 pp. 6633-6633 [ Pubmed: 39117603 DOI: doi:10.1038/s41467-024-50672-8 ]
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 1 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us19 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es26 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Eukaryotic translation initiation factor 3 subunit e (52 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Programmed cell death protein 4 (52 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
- Rrna (555 kDa, RNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit a (166 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit i (36 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit b (77 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es12 (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es17 (15 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit h (39 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit l (66 kDa, Protein from Homo sapiens)
- Eukaryotic initiation factor 4a-i (44 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Homo sapiens)
- Pdcd4-40s-eif4a-eif3-eif1 complex (2 MDa, Complex from Homo sapiens)
- Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit g (35 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es19 (16 kDa, Protein from Homo sapiens)
- Spermidine (145 Da, Ligand)
- Acetic acid (60 Da, Ligand)
- Small ribosomal subunit protein es30 (6 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es1 (30 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es32 (3 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5 (31 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
Structure of a human 48S translation initiation complex with eIF4F and eIF4A
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8oz0
Q-score: 0.391
Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Fraser CS, Ramakrishnan V
Nat Struct Mol Biol (2024) 31 pp. 455-464 [ Pubmed: 38287194 DOI: doi:10.1038/s41594-023-01196-0 ]
- Eukaryotic translation initiation factor 3 subunit e (52 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 3 (51 kDa, Protein from Homo sapiens)
- 18s rrna (555 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- Mrna (67 kDa, RNA from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit b (92 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit g (35 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit h (39 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 2 (38 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Eukaryotic translation initiation factor 3 subunit l (66 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- Eukaryotic initiation factor 4a-i (46 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit i (36 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 1a, x-chromosomal (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Human 48s translation initiation complex (Complex from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 4 gamma 1 (155 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 5 (49 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 1 (36 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit a (166 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- Trnaimet (24 kDa, RNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7ase
Q-score: 0.314
Bochler A, Querido JB, Prilepskaja T, Soufari H, Simonetti A, Del Cistia ML, Kuhn L, Ribeiro AR, Valasek LS, Hashem Y
Cell Rep (2020) 33 pp. 108534-108534 [ Pubmed: 33357443 DOI: doi:10.1016/j.celrep.2020.108534 ]
- Eif3a (87 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s19, putative (18 kDa, Protein from Trypanosoma cruzi)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 40s ribosomal protein s2, putative (28 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 (eif-3) interacting protein, putative (56 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s13, putative (17 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s15, putative (17 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s18, putative (17 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s8 (25 kDa, Protein from Trypanosoma cruzi)
- Guanine nucleotide-binding protein subunit beta-like protein (35 kDa, Protein from Trypanosoma cruzi)
- Initiator trna-met (24 kDa, RNA from Trypanosoma cruzi)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Trypanosoma cruzi)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s7 (24 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s17, putative (16 kDa, Protein from Trypanosoma cruzi)
- Translation initiation factor, putative (38 kDa, Protein from Trypanosoma cruzi)
- El41 (4 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s23, putative (15 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s12 (15 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s3a-2 (29 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s3, putative (24 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s24 (15 kDa, Protein from Trypanosoma cruzi)
- Csn8_psd8_eif3k domain-containing protein (22 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s27, putative (9 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s30 (7 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 5, putative (42 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein sa (27 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s6 (28 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s11, putative (20 kDa, Protein from Trypanosoma cruzi)
- Rna-binding protein, putative (27 kDa, Protein from Trypanosoma cruzi)
- Elongation initiation factor 2 alpha subunit, putative (47 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s26 (12 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit e (46 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s33 (10 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s29, putative (6 kDa, Protein from Trypanosoma cruzi)
- Putative 40s ribosomal protein s21 (27 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 2 subunit, putative (52 kDa, Protein from Trypanosoma cruzi)
- Kddx60 (246 kDa, Protein from Trypanosoma cruzi)
- 43s preinitiation complex from trypanosoma cruzi with the helicase kddx60 (Complex from Trypanosoma cruzi)
- 40s ribosomal protein s15a, putative (16 kDa, Protein from Trypanosoma cruzi)
- Eif3h (38 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit 7-like protein, putative (57 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s4 (30 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s20, putative (13 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s5, putative (21 kDa, Protein from Trypanosoma cruzi)
- 18s (746 kDa, RNA from Trypanosoma cruzi)
- 40s ribosomal protein s14, putative (15 kDa, Protein from Trypanosoma cruzi)
- Protein translation factor sui1 homolog, putative (12 kDa, Protein from Trypanosoma cruzi)
- Jab_mpn domain-containing protein (38 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s16, putative (16 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s10, putative (18 kDa, Protein from Trypanosoma cruzi)
- 60s ribosomal protein l40 (16 kDa, Protein from Trypanosoma cruzi)
- Putative eukaryotic translation initiation factor 1a (18 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit 8, putative (82 kDa, Protein from Trypanosoma cruzi)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s25 (12 kDa, Protein from Trypanosoma cruzi)
Structure of a human 48S translational initiation complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6zmw
Q-score: 0.293
Brito Querido J, Sokabe M, Kraatz S, Gordiyenko Y, Skehel JM, Fraser CS, Ramakrishnan V
Science (2020) 369 pp. 1220-1227 [ Pubmed: 32883864 DOI: doi:10.1126/science.aba4904 ]
- Eukaryotic translation initiation factor 3 subunit e (52 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 3 (51 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 48s initiation complex (Complex)
- Eukaryotic translation initiation factor 3 subunit j (29 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit b (92 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit g (35 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit h (39 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 2 (38 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Eukaryotic translation initiation factor 3 subunit l (66 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- Eukaryotic initiation factor 4a-i (46 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 48s initiation complex (Complex from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit i (36 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 1a, x-chromosomal (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- Mrna (9 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit a (166 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 1 (36 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- Initiator met-trna-i (24 kDa, RNA from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 1 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 4 gamma 1 (145 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
Structure of a human 48S translational initiation complex - eIF3
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6ybd
Q-score: 0.416
Brito Querido J, Sokabe M, Kraatz S, Gordiyenko Y, Skehel JM, Fraser CS, Ramakrishnan V
Science (2020) 369 pp. 1220-1227 [ DOI: doi:10.1126/science.aba4904 Pubmed: 32883864 ]
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit l (66 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit e (52 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit a (166 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit h (39 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Homo sapiens)
- 48s initiation complex (Complex from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Homo sapiens)
Structure of a human 48S translational initiation complex - head
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ybs
Q-score: 0.529
Brito Querido J, Sokabe M, Kraatz S, Gordiyenko Y, Skehel JM, Fraser CS, Ramakrishnan V
Science (2020) 369 pp. 1220-1227 [ DOI: doi:10.1126/science.aba4904 Pubmed: 32883864 ]
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 48s initiation complex (Complex from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit g (35 kDa, Protein from Homo sapiens)
Structure of a human 48S translational initiation complex - 40S body
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ybw
Q-score: 0.517
Brito Querido J, Sokabe M, Kraatz S, Gordiyenko Y, Skehel JM, Fraser CS, Ramakrishnan V
Science (2020) 369 pp. 1220-1227 [ Pubmed: 32883864 DOI: doi:10.1126/science.aba4904 ]
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit j (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 1a, x-chromosomal (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- Human 48s initiation complex (Complex)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Mrna (9 kDa, RNA from Homo sapiens)
- Human 48s initiation complex (Complex from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 1 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 5opt
Q-score: 0.284
Brito Querido J, Mancera-Martinez E, Vicens Q, Bochler A, Chicher J, Simonetti A, Hashem Y
Structure (2017) 25 pp. 1785-1794.e3 [ Pubmed: 29107485 DOI: doi:10.1016/j.str.2017.09.014 ]
- 40s ribosomal protein s2, putative (28 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s15, putative (17 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s13, putative (17 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s33, putative (12 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s26 (12 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s24 (15 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 80s ribosome from trypanosoma cruzi (Complex from Trypanosoma cruzi)
- Activated protein kinase c receptor, putative (35 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s18, putative (17 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s14, putative (15 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ribosomal protein s29, putative (6 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s15a, putative (14 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s9, putative (22 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s27, putative (9 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s16, putative (16 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s3a-2 (29 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s8 (25 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s17, putative (22 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s21, putative (26 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ubiquitin/ribosomal protein s27a, putative (16 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein sa (27 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ribosomal protein s25, putative (12 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Rna-binding protein, putative (27 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s4 (30 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s12 (15 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 18s rrna (746 kDa, RNA from Trypanosoma cruzi)
- 40s ribosomal protein s6 (28 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s11, putative (20 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ribosomal protein s20, putative (13 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s3, putative (24 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s10, putative (18 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ribosomal protein s19, putative (18 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s30 (7 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s23, putative (15 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ribosomal protein s7, putative (24 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 40s ribosomal protein s5, putative (21 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
Resolution: 5.8 Å
EM Method: Single-particle
Fitted PDBs: 5k0y
Q-score: 0.141
Simonetti A, Brito Querido J, Myasnikov AG, Mancera-Martinez E, Renaud A, Kuhn L, Hashem Y
Mol Cell (2016) 63 pp. 206-217 [ Pubmed: 27373335 DOI: doi:10.1016/j.molcel.2016.05.033 ]
- Eukaryotic initiation factor 2 subunit beta (eif2-beta) (2 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us12 (15 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (572 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein es1 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us19 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us9 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es31 (8 kDa, Protein from Oryctolagus cuniculus)
- Trna (24 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic initiation factor 2 gamma subunit (eif2-gamma) (45 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Mrna (9 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- M48s late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eif2 ternary complex and eif3 i and g subunits relocated to the intersubunit face (2 MDa, Complex)
- Ribosomal protein us2 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us7 (21 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 2 subunit 1 (30 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit g (8 kDa, Protein from Homo sapiens)
- Ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s21 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit g (4 kDa, Protein from Homo sapiens)
- Ribosomal protein es17 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit i (37 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es30 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (23 kDa, Protein from Oryctolagus cuniculus)