43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7ase
Q-score: 0.314
Bochler A, Querido JB, Prilepskaja T, Soufari H, Simonetti A, Del Cistia ML, Kuhn L, Ribeiro AR, Valasek LS, Hashem Y
Cell Rep (2020) 33 pp. 108534-108534 [ Pubmed: 33357443 DOI: doi:10.1016/j.celrep.2020.108534 ]
- Putative eukaryotic translation initiation factor 1a (18 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s8 (25 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s18, putative (17 kDa, Protein from Trypanosoma cruzi)
- Elongation initiation factor 2 alpha subunit, putative (47 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s20, putative (13 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s11, putative (20 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s29, putative (6 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s33 (10 kDa, Protein from Trypanosoma cruzi)
- El41 (4 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s7 (24 kDa, Protein from Trypanosoma cruzi)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Trypanosoma cruzi)
- Putative 40s ribosomal protein s21 (27 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit 7-like protein, putative (57 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s4 (30 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s15a, putative (16 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s6 (28 kDa, Protein from Trypanosoma cruzi)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein s19, putative (18 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s14, putative (15 kDa, Protein from Trypanosoma cruzi)
- Kddx60 (246 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s25 (12 kDa, Protein from Trypanosoma cruzi)
- Translation initiation factor, putative (38 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s3a-2 (29 kDa, Protein from Trypanosoma cruzi)
- Rna-binding protein, putative (27 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s16, putative (16 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s12 (15 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s3, putative (24 kDa, Protein from Trypanosoma cruzi)
- Eif3h (38 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s23, putative (15 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s13, putative (17 kDa, Protein from Trypanosoma cruzi)
- Guanine nucleotide-binding protein subunit beta-like protein (35 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit e (46 kDa, Protein from Trypanosoma cruzi)
- Jab_mpn domain-containing protein (38 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 2 subunit, putative (52 kDa, Protein from Trypanosoma cruzi)
- Csn8_psd8_eif3k domain-containing protein (22 kDa, Protein from Trypanosoma cruzi)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 40s ribosomal protein s26 (12 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s17, putative (16 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s30 (7 kDa, Protein from Trypanosoma cruzi)
- Initiator trna-met (24 kDa, RNA from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 5, putative (42 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s15, putative (17 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s27, putative (9 kDa, Protein from Trypanosoma cruzi)
- Protein translation factor sui1 homolog, putative (12 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s24 (15 kDa, Protein from Trypanosoma cruzi)
- Eif3a (87 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s2, putative (28 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein sa (27 kDa, Protein from Trypanosoma cruzi)
- Magnesium ion (24 Da, Ligand)
- Eukaryotic translation initiation factor 3 subunit 8, putative (82 kDa, Protein from Trypanosoma cruzi)
- 60s ribosomal protein l40 (16 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 (eif-3) interacting protein, putative (56 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s10, putative (18 kDa, Protein from Trypanosoma cruzi)
- 18s (746 kDa, RNA from Trypanosoma cruzi)
- 40s ribosomal protein s5, putative (21 kDa, Protein from Trypanosoma cruzi)
- 43s preinitiation complex from trypanosoma cruzi with the helicase kddx60 (Complex from Trypanosoma cruzi)
Resolution: 5.8 Å
EM Method: Single-particle
Fitted PDBs: 5k0y
Q-score: 0.141
Simonetti A, Brito Querido J, Myasnikov AG, Mancera-Martinez E, Renaud A, Kuhn L, Hashem Y
Mol Cell (2016) 63 pp. 206-217 [ Pubmed: 27373335 DOI: doi:10.1016/j.molcel.2016.05.033 ]
- Ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us19 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us2 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us9 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic initiation factor 2 subunit beta (eif2-beta) (2 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us12 (15 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (572 kDa, RNA from Oryctolagus cuniculus)
- Eukaryotic initiation factor 2 gamma subunit (eif2-gamma) (45 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s21 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit i (37 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us10 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es31 (8 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 2 subunit 1 (30 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit g (4 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es17 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit g (8 kDa, Protein from Homo sapiens)
- Ribosomal protein us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Trna (24 kDa, RNA from Oryctolagus cuniculus)
- M48s late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eif2 ternary complex and eif3 i and g subunits relocated to the intersubunit face (2 MDa, Complex)
- Ribosomal protein es30 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Mrna (9 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein es1 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us11 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us7 (21 kDa, Protein from Oryctolagus cuniculus)