Cryo-EM structure of of the large subunit of Leishmania ribosome bound to paromomycin
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 6az3
Q-score: 0.599
Shalev-Benami M, Zhang Y, Rozenberg H, Nobe Y, Taoka M, Matzov D, Zimmerman E, Bashan A, Isobe T, Jaffe CL, Yonath A, Skiniotis G
Nat Commun (2017) 8 pp. 1589-1589 [ DOI: doi:10.1038/s41467-017-01664-4 Pubmed: 29150609 ]
- Rrna beta (492 kDa, RNA from Leishmania donovani)
- Rrna alpha (575 kDa, RNA from Leishmania donovani)
- 60s ribosomal protein l23a, putative (13 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania donovani)
- Ribosomal protein el41 (4 kDa, Protein from Leishmania donovani)
- 60s_ribosomal_protein_l35_putative/genedb:lmjf.26.2330/genedb:lmjf.26.2340 (14 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l10, putative (24 kDa, Protein from Leishmania donovani)
- Ribosomal protein ul2 (27 kDa, Protein from Leishmania donovani)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l11 (l5, l16) (19 kDa, Protein from Leishmania donovani)
- Rrna epsilon (42 kDa, RNA from Leishmania donovani)
- Ribosomal protein ul24 (13 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l27a/l29, putative (16 kDa, Protein from Leishmania donovani)
- Rrna gamma (67 kDa, RNA from Leishmania donovani)
- 60s ribosomal protein l34, putative (14 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l23, putative (14 kDa, Protein from Leishmania donovani)
- Ribosomal l38e family protein (8 kDa, Protein from Leishmania donovani)
- Ribosomal protein ul3 (45 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l18, putative (21 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l37 (9 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l9, putative (21 kDa, Protein from Leishmania donovani)
- Ribosomal protein el24 (7 kDa, Protein from Leishmania donovani)
- Ribosomal protein el13 (23 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l39, putative (6 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l28, putative (15 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l21, putative (17 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l29 (7 kDa, Protein from Leishmania donovani)
- Ribosomal l27e family protein (15 kDa, Protein from Leishmania donovani)
- Water (18 Da, Ligand)
- Ribosomal protein ul13 (25 kDa, Protein from Leishmania donovani)
- 60s_ribosomal_protein_l32/genedb:lmjf.21.1720 (15 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l36, putative (11 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania donovani)
- Probable 60s ribosomal protein l14 (17 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l5, putative (34 kDa, Protein from Leishmania donovani)
- Rrna 5s (37 kDa, RNA from Leishmania donovani)
- 60s ribosomal protein l7a (39 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l7 family protein (26 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l30 (10 kDa, Protein from Leishmania donovani)
- Ubiquitin-60s ribosomal protein l40 (5 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l17, putative (17 kDa, Protein from Leishmania donovani)
- Rrna zeta (22 kDa, RNA from Leishmania donovani)
- 60s ribosomal protein l22, putative (14 kDa, Protein from Leishmania donovani)
- Paromomycin (615 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein l19e family protein (22 kDa, Protein from Leishmania donovani)
- Ribosomal protein l1a, putative (40 kDa, Protein from Leishmania donovani)
- Rrna 5.8s (54 kDa, RNA from Leishmania donovani)
- Leishmania donovani 91s ribosome lsu (Complex from Leishmania donovani)
- 60s ribosomal protein l44, putative (11 kDa, Protein from Leishmania donovani)
- Rrna delta (59 kDa, RNA from Leishmania donovani)
- Ribosomal protein l35ae family protein (14 kDa, Protein from Leishmania donovani)
- 60s ribosomal subunit protein l31, putative (13 kDa, Protein from Leishmania donovani)
- Ribosomal protein el6 (21 kDa, Protein from Leishmania donovani)
Large subunit of Toxoplasma gondii ribosome
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 5xxb
Q-score: 0.507
Li Z, Guo Q, Zheng L, Ji Y, Xie YT, Lai DH, Lun ZR, Suo X, Gao N
Cell Res (2017) 27 pp. 1275-1288 [ Pubmed: 28809395 DOI: doi:10.1038/cr.2017.104 ]
- Ribosomal protein el40 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el21 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el34 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul22 (22 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul6 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el27 (16 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el39 (6 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el13 (39 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul4 (45 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el32 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el33 (12 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul23 (18 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el29 (6 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el28 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul15 (16 kDa, Protein from Toxoplasma gondii)
- 5.8s rna (50 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein el38 (9 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul24 (16 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el20 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul16 (24 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul18 (35 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el8 (31 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el36 (11 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el37 (11 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el42 (12 kDa, Protein from Toxoplasma gondii)
- 5s rna (39 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein el22 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el15 (24 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul3 (44 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el18 (21 kDa, Protein from Toxoplasma gondii)
- Large subunit of toxoplasma gondii ribosome (Complex from Toxoplasma gondii)
- Ribosomal protein el6 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul30 (30 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el43 (10 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul13 (31 kDa, Protein from Toxoplasma gondii)
- 25s rna (1 MDa, RNA from Toxoplasma gondii)
- Ribosomal protein ul29 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el31 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul14 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el24 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul5 (20 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el19 (22 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el30 (11 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul2 (28 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el14 (15 kDa, Protein from Toxoplasma gondii)
Large subunit of Trichomonas vaginalis ribosome
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 5xy3
Q-score: 0.51
Li Z, Guo Q, Zheng L, Ji Y, Xie YT, Lai DH, Lun ZR, Suo X, Gao N
Cell Res (2017) 27 pp. 1275-1288 [ Pubmed: 28809395 DOI: doi:10.1038/cr.2017.104 ]
- Ribosomal protein l14, putative (14 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l8, putative (26 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein, putative (40 kDa, Protein from Trichomonas vaginalis)
- Uncharacterized protein (10 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l27e, putative (15 kDa, Protein from Trichomonas vaginalis)
- 60s ribosomal protein l23, putative (14 kDa, Protein from Trichomonas vaginalis)
- 25s ribosomal rna (892 kDa, RNA from Trichomonas vaginalis)
- 60s ribosomal protein l6, putative (16 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l6, putative (22 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l31e, putative (12 kDa, Protein from Trichomonas vaginalis)
- Large subunit of trichomonas vaginalis ribosome (Complex from Trichomonas vaginalis)
- 60s ribosomal protein l19-3, putative (21 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l21e, putative (17 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l34e, putative (13 kDa, Protein from Trichomonas vaginalis)
- Ubiquitin, putative (15 kDa, Protein from Trichomonas vaginalis)
- Uncharacterized protein (46 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l5 (34 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l22, putative (18 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l24, putative (15 kDa, Protein from Trichomonas vaginalis)
- 60s ribosomal protein l30, putative (12 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l37 (9 kDa, Protein from Trichomonas vaginalis)
- 60s ribosomal protein l44, putative (12 kDa, Protein from Trichomonas vaginalis)
- 5s ribosomal rna (37 kDa, RNA from Trichomonas vaginalis)
- Uncharacterized protein (17 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l38e, putative (8 kDa, Protein from Trichomonas vaginalis)
- 60s ribosomal protein l22-1, putative (12 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l15 (24 kDa, Protein from Trichomonas vaginalis)
- 60s ribosomal protein l18a (19 kDa, Protein from Trichomonas vaginalis)
- 60s ribosomal protein l18, putative (21 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l36e, putative (10 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l13e, putative (21 kDa, Protein from Trichomonas vaginalis)
- 60s ribosomal protein l39, putative (6 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l32, putative (15 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein, putative (23 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l24e, putative (13 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l13, putative (22 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l30p/l7e, putative (26 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l29, putative (14 kDa, Protein from Trichomonas vaginalis)
- 60s ribosomal protein l29 (6 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l23, putative (15 kDa, Protein from Trichomonas vaginalis)
- Ribosomal protein l35ae, putative (11 kDa, Protein from Trichomonas vaginalis)
- 60s ribosomal protein l11, putative (19 kDa, Protein from Trichomonas vaginalis)
- 5.8s ribosomal rna (52 kDa, RNA from Trichomonas vaginalis)
- Ribosomal protein l7ae, putative (27 kDa, Protein from Trichomonas vaginalis)
Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5lks
Q-score: 0.429
Myasnikov AG, Kundhavai Natchiar S, Nebout M, Hazemann I, Imbert V, Khatter H, Peyron JF, Klaholz BP
Nat Commun (2016) 7 pp. 12856-12856 [ Pubmed: 27665925 DOI: doi:10.1038/ncomms12856 ]
- 60s ribosomal protein l23a (17 kDa, Protein from Human)
- 40s ribosomal protein s13 (17 kDa, Protein from Human)
- 60s ribosomal protein l18a (20 kDa, Protein from Human)
- 40s ribosomal protein s19 (16 kDa, Protein from Human)
- 60s ribosomal protein l17 (21 kDa, Protein from Human)
- 40s ribosomal protein s17 (15 kDa, Protein from Human)
- 40s ribosomal protein s29 (6 kDa, Protein from Human)
- 60s ribosomal protein l34 (13 kDa, Protein from Human)
- Human 80s ribsome (Complex from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Human)
- 60s ribosomal protein l4 (47 kDa, Protein from Human)
- 60s ribosomal protein l22 (14 kDa, Protein from Human)
- 60s ribosomal protein l5 (34 kDa, Protein from Human)
- 60s ribosomal protein l35a (12 kDa, Protein from Human)
- 40s ribosomal protein s11 (18 kDa, Protein from Human)
- 40s ribosomal protein s2 (31 kDa, Protein from Human)
- 60s ribosomal protein l32 (15 kDa, Protein from Human)
- 40s ribosomal protein s16 (16 kDa, Protein from Human)
- 60s ribosomal protein l23 (14 kDa, Protein from Human)
- 40s ribosomal protein s28 (7 kDa, Protein from Human)
- 60s ribosomal protein l13a (23 kDa, Protein from Human)
- 40s ribosomal protein s12 (14 kDa, Protein from Human)
- 60s ribosomal protein l35 (14 kDa, Protein from Human)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- 40s ribosomal protein s23 (15 kDa, Protein from Human)
- 40s ribosomal protein s7 (22 kDa, Protein from Human)
- 40s ribosomal protein s15 (17 kDa, Protein from Human)
- 60s ribosomal protein l13 (24 kDa, Protein from Human)
- 60s ribosomal protein l8 (28 kDa, Protein from Human)
- 60s ribosomal protein l31 (14 kDa, Protein from Human)
- Ribosomal protein s30 (14 kDa, Protein from Human)
- 60s ribosomal protein l10a (24 kDa, Protein from Human)
- 60s ribosomal protein l39 (6 kDa, Protein from Human)
- 60s ribosomal protein l38 (8 kDa, Protein from Human)
- Water (18 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Human)
- 40s ribosomal protein s3a (30 kDa, Protein from Human)
- 5.8s ribosomal rna (50 kDa, RNA from Human)
- 40s ribosomal protein s3 (26 kDa, Protein from Human)
- 60s ribosomal protein l36a (12 kDa, Protein from Human)
- Ribosomal protein l29, isoform cra_a (17 kDa, Protein from Human)
- 40s ribosomal protein s8 (24 kDa, Protein from Human)
- 60s ribosomal protein l26 (17 kDa, Protein from Human)
- 60s ribosomal protein l27a (16 kDa, Protein from Human)
- 60s ribosomal protein l37 (11 kDa, Protein from Human)
- 60s ribosomal protein l7 (29 kDa, Protein from Human)
- 40s ribosomal protein s20 (13 kDa, Protein from Human)
- 60s ribosomal protein l37a (10 kDa, Protein from Human)
- 60s ribosomal protein l6 (32 kDa, Protein from Human)
- 40s ribosomal protein s27 (9 kDa, Protein from Human)
- 40s ribosomal protein s6 (28 kDa, Protein from Human)
- 5s ribosomal rna (38 kDa, RNA from Human)
- 60s ribosomal protein l14 (23 kDa, Protein from Human)
- 40s ribosomal protein s9 (22 kDa, Protein from Human)
- 28s ribosomal rna (1 MDa, RNA from Human)
- 40s ribosomal protein sa (32 kDa, Protein from Human)
- 60s ribosomal protein l30 (12 kDa, Protein from Human)
- 18s ribosomal rna (602 kDa, RNA from Human)
- 60s ribosomal protein l18 (21 kDa, Protein from Human)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l28 (15 kDa, Protein from Human)
- 60s ribosomal protein l41 (3 kDa, Protein from Human)
- 40s ribosomal protein s18 (17 kDa, Protein from Human)
- 40s ribosomal protein s5 (22 kDa, Protein from Human)
- 60s ribosomal protein l3 (46 kDa, Protein from Human)
- 40s ribosomal protein s21 (9 kDa, Protein from Human)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Human)
- 40s ribosomal protein s26 (13 kDa, Protein from Human)
- 40s ribosomal protein s10 (18 kDa, Protein from Human)
- 60s ribosomal protein l11 (20 kDa, Protein from Human)
- 60s ribosomal protein l27 (15 kDa, Protein from Human)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Human)
- 40s ribosomal protein s15a (14 kDa, Protein from Human)
- 60s ribosomal protein l24 (17 kDa, Protein from Human)
- 60s ribosomal protein l21 (18 kDa, Protein from Human)
- 60s ribosomal protein l10-like (24 kDa, Protein from Human)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Human)
- 40s ribosomal protein s25 (13 kDa, Protein from Human)
- 60s ribosomal protein l36 (12 kDa, Protein from Human)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Human)
- 60s ribosomal protein l19 (23 kDa, Protein from Human)
- 40s ribosomal protein s14 (16 kDa, Protein from Human)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l9 (21 kDa, Protein from Human)
- 60s ribosomal protein l7a (30 kDa, Protein from Human)
Structure of the Plasmodium falciparum 80S ribosome bound to the antimalarial drug mefloquine
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 5umd
Q-score: 0.46
Wong W, Bai XC, Sleebs BE, Triglia T, Brown A, Thompson JK, Jackson KE, Hanssen E, Marapana DS, Fernandez IS, Ralph SA, Cowman AF, Scheres SH, Baum J
Nat Microbiol (2017) 2 pp. 17031-17031 [ Pubmed: 28288098 DOI: doi:10.1038/nmicrobiol.2017.31 ]
- 60s ribosomal protein l35ae, putative (16 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l13, putative (23 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l23 (22 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l26, putative (14 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l4 (46 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l7, putative (30 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l21 (18 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l27a, putative (16 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l22, putative (16 kDa, Protein from Plasmodium falciparum 3D7)
- 28s ribosomal rna (1 MDa, RNA from Plasmodium falciparum 3D7)
- 60s ribosomal protein l6-2, putative (25 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l5, putative (34 kDa, Protein from Plasmodium falciparum 3D7)
- Ribosomal protein l15 (24 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l18a (21 kDa, Protein from Plasmodium falciparum 3D7)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l37a (10 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l28 (14 kDa, Protein from Plasmodium falciparum 3D7)
- Ribosomal protein l37 (10 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l27 (16 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l38 (10 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l6, putative (21 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l31 (14 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l34 (17 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l24, putative (19 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l3 (44 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l29, putative (8 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l36 (12 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l11a, putative (20 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l41 (5 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l35, putative (14 kDa, Protein from Plasmodium falciparum 3D7)
- (11r,12s)- mefloquine (378 Da, Ligand)
- 60s ribosomal protein l19 (21 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l10, putative (25 kDa, Protein from Plasmodium falciparum 3D7)
- Plasmodium falciparum 80s ribosome bound to mefloquine (4 MDa, Complex from Plasmodium falciparum 3D7)
- 60s ribosomal protein l7-3, putative (32 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l30e, putative (11 kDa, Protein from Plasmodium falciparum 3D7)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l32 (15 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l23, putative (15 kDa, Protein from Plasmodium falciparum 3D7)
- 5.8s ribosomal rna (51 kDa, RNA from Plasmodium falciparum 3D7)
- 60s ribosomal protein l17, putative (23 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l18-2, putative (21 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l39 (6 kDa, Protein from Plasmodium falciparum 3D7)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l13 (25 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l44 (12 kDa, Protein from Plasmodium falciparum 3D7)
- 5s ribosomal rna (38 kDa, RNA from Plasmodium falciparum 3D7)
- 60s ribosomal protein l2 (28 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l14, putative (19 kDa, Protein from Plasmodium falciparum 3D7)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 5t62
Q-score: 0.477
Malyutin AG, Musalgaonkar S, Patchett S, Frank J, Johnson AW
EMBO J (2017) 36 pp. 854-868 [ Pubmed: 28179369 DOI: doi:10.15252/embj.201696012 ]
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l24-a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ribosomal protein ul1 (18 kDa, Protein from Saccharomyces cerevisiae)
- Large subunit gtpase 1 (71 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s-nmd3-tif6-lsg1 complex with focus on nmd3 (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l10 (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s in complex with nmd3, lsg1, and tif6 (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 6 (28 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- Potassium ion (39 Da, Ligand)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Water (18 Da, Ligand)
- 60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae S288C)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae S288C)
- 5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Tpa_inf: saccharomyces cerevisiae s288c chromosome xii, complete sequence (1 MDa, RNA from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal export protein nmd3 (59 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 5t6r
Q-score: 0.325
Malyutin AG, Musalgaonkar S, Patchett S, Frank J, Johnson AW
EMBO J (2017) 36 pp. 854-868 [ DOI: doi:10.15252/embj.201696012 Pubmed: 28179369 ]
- 60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s in complex with nmd3 (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosomal protein ul1 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Potassium ion (39 Da, Ligand)
- 60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Water (18 Da, Ligand)
- 60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l24-a (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Maltose binding protein, 60s ribosomal export protein nmd3 fusion (103 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l10 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5mc6
Q-score: 0.362
Schmidt C, Kowalinski E, Shanmuganathan V, Defenouillere Q, Braunger K, Heuer A, Pech M, Namane A, Berninghausen O, Fromont-Racine M, Jacquier A, Conti E, Becker T, Beckmann R
Science (2016) 354 pp. 1431-1433 [ DOI: doi:10.1126/science.aaf7520 Pubmed: 27980209 ]
- 40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
- P-site trna (24 kDa, RNA from Baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (22 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s1-a (28 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l41-a (3 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- Native ribosome-ski2-ski3-ski8 complex from s. cerevisiae (3 MDa, Complex from Saccharomyces cerevisiae)
- 18s ribosomal rna (579 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (28 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l2-a (27 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s25-a (12 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s11-a (17 kDa, Protein from Baker's yeast)
- 5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
- Ul1 (17 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s12 (15 kDa, Protein from Baker's yeast)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s19-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l11-a (19 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l43-a (10 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s28-b (7 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s10-a (12 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s0-a (28 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l24-a (17 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l14-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
- Antiviral protein ski8 (44 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from Baker's yeast)
- Eukaryotic translation initiation factor 5a-1 (17 kDa, Protein from Baker's yeast)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Baker's yeast)
- Mrna (10 kDa, RNA from Baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (20 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s2 (27 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s18-a (17 kDa, Protein from Baker's yeast)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s13 (17 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s9-a (22 kDa, Protein from Baker's yeast)
- Superkiller protein 3 (163 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l30 (11 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l22-a (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s20 (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s6-a (27 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s3 (26 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s29-a (6 kDa, Protein from Baker's yeast)
- Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s21-a (9 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s5 (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s14-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s15 (16 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
- Antiviral helicase ski2 (146 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s26-a (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s17-b (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s23-a (16 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l34-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l25 (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l42-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s30-a (7 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l10 (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- A-site trna (24 kDa, RNA from Baker's yeast)
Nonstop ribosomal complex bound with Dom34 and Hbs1
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 5m1j
Q-score: 0.45
Hilal T, Yamamoto H, Loerke J, Burger J, Mielke T, Spahn CM
Nat Commun (2016) 7 pp. 13521-13521 [ DOI: doi:10.1038/ncomms13521 Pubmed: 27995908 ]
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l13-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l43-b (9 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s13 (16 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s6-a (25 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s5 (22 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l41-b (3 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s9-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l34-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l25 (13 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s2 (23 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Ubiquitin-40s ribosomal protein s31 (8 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l14-a (14 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s0-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s3 (24 kDa, Protein from Saccharomyces cerevisiae)
- Yeast phe-trna-phe (24 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s25-a (8 kDa, Protein from Saccharomyces cerevisiae)
- Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s23-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s18-a (16 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
- Nonstop ribosomal complex bound with dom34-hbs1-gmppnp (3 MDa, Complex)
- 60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s15 (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l8-a (25 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s14-a (13 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s17-b (14 kDa, Protein from Saccharomyces cerevisiae)
- Protein dom34 (43 kDa, Protein from Saccharomyces cerevisiae)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s22-a (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s29-a (6 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s28-b (7 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l7-a (25 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s10-a (11 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
- N-acetyl-l-phenylalanine (207 Da, Ligand)
- 40s ribosomal protein s20 (12 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s30-a (6 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s1-a (24 kDa, Protein from Saccharomyces cerevisiae)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l10 (25 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l30 (10 kDa, Protein from Saccharomyces cerevisiae)
- Nonstop mrna (6 kDa, RNA from synthetic construct)
- Protein hbs1 (68 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l42-b (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l6-a (19 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 18s ribosomal rna (579 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l24-a (11 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s12 (13 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s26-b (11 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l22-a (11 kDa, Protein from Saccharomyces cerevisiae)