Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6gz5
Q-score: 0.38
Flis J, Holm M, Rundlet EJ, Loerke J, Hilal T, Dabrowski M, Burger J, Mielke T, Blanchard SC, Spahn CMT, Budkevich TV
Cell Rep (2018) 25 pp. 2676-2688.e7 [ DOI: doi:10.1016/j.celrep.2018.11.040 Pubmed: 30517857 ]
- P/p-site-trna (24 kDa, RNA from rabbit)
- Ribosomal protein us7 (21 kDa, Protein from rabbit)
- Ribosomal protein el13 (23 kDa, Protein from rabbit)
- Ribosomal protein el29 (7 kDa, Protein from rabbit)
- Ribosomal protein el24 (14 kDa, Protein from rabbit)
- Ribosomal protein ul23 (13 kDa, Protein from rabbit)
- Ribosomal protein ul13 (22 kDa, Protein from rabbit)
- Ribosomal protein us14 (6 kDa, Protein from Enterobacteria phage SP6)
- Ribosomal protein ul2 (27 kDa, Protein from rabbit)
- Ribosomal protein us13 (16 kDa, Protein from rabbit)
- Ribosomal protein ul30 (27 kDa, Protein from rabbit)
- Ribosomal protein us3 (24 kDa, Protein from rabbit)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Ribosomal protein es12 (13 kDa, Protein from rabbit)
- Ribosomal protein es4 (28 kDa, Protein from rabbit)
- Ribosomal protein us8 (14 kDa, Protein from rabbit)
- Ribosomal protein ul11 (16 kDa, Protein from rabbit)
- 28s ribosomal rna (1 MDa, RNA from rabbit)
- Ribosomal protein el41 (3 kDa, Protein from rabbit)
- Ribosomal protein ul5 (19 kDa, Protein from rabbit)
- Ribosomal protein es27 (9 kDa, Protein from rabbit)
- Ribosomal protein us12 (15 kDa, Protein from rabbit)
- Ribosomal protein es8 (24 kDa, Protein from rabbit)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us11 (14 kDa, Protein from rabbit)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein ul29 (14 kDa, Protein from rabbit)
- Ribosomal protein us17 (17 kDa, Protein from rabbit)
- Ribosomal protein el20 (20 kDa, Protein from rabbit)
- Translocation intermediate ti-post-3 (4 MDa, Complex)
- Translocation intermediate ti-post-3 (Complex from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from rabbit)
- Ribosomal protein es17 (14 kDa, Protein from rabbit)
- Ribosomal protein ul1 (24 kDa, Protein from rabbit)
- Ribosomal protein es24 (14 kDa, Protein from rabbit)
- Ribosomal protein ul4 (41 kDa, Protein from rabbit)
- Ribosomal protein el15 (24 kDa, Protein from rabbit)
- Ribosomal protein ul15 (16 kDa, Protein from rabbit)
- Ribosomal protein el18 (21 kDa, Protein from rabbit)
- Ribosomal protein ul14 (13 kDa, Protein from rabbit)
- Mrna (3 kDa, RNA from Enterobacteria phage SP6)
- Ribosomal protein el38 (8 kDa, Protein from rabbit)
- Ribosomal protein el32 (15 kDa, Protein from rabbit)
- Ribosomal protein el6 (22 kDa, Protein from rabbit)
- Ribosomal protein el30 (11 kDa, Protein from rabbit)
- Translocation intermediate ti-post-3 (Complex from Enterobacteria phage SP6)
- Ribosomal protein us2 (24 kDa, Protein from rabbit)
- Ribosomal protein ul6 (21 kDa, Protein from rabbit)
- Ribosomal protein el27 (15 kDa, Protein from rabbit)
- Ribosomal protein el21 (18 kDa, Protein from rabbit)
- Ribosomal protein el39 (6 kDa, Protein from rabbit)
- Ribosomal protein es21 (8 kDa, Protein from rabbit)
- Ribosomal protein ul10 (22 kDa, Protein from rabbit)
- Ribosomal protein ul18 (34 kDa, Protein from rabbit)
- Ribosomal protein el14 (16 kDa, Protein from rabbit)
- Ribosomal protein el28 (13 kDa, Protein from rabbit)
- Ribosomal protein es1 (24 kDa, Protein from rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from rabbit)
- Ribosomal protein es19 (15 kDa, Protein from rabbit)
- Ribosomal protein es28 (7 kDa, Protein from rabbit)
- Eukaryotic elongation factor 2 (eef2) (95 kDa, Protein from rabbit)
- Ribosomal protein el37 (9 kDa, Protein from rabbit)
- Ribosomal protein es25 (9 kDa, Protein from rabbit)
- Ribosomal protein es7 (20 kDa, Protein from rabbit)
- Ribosomal protein el42 (12 kDa, Protein from rabbit)
- 5s ribosomal rna (38 kDa, RNA from rabbit)
- Ribosomal protein el33 (12 kDa, Protein from rabbit)
- 18s ribosomal rna (551 kDa, RNA from rabbit)
- Ribosomal protein el34 (12 kDa, Protein from rabbit)
- Ribosomal protein el40 (5 kDa, Protein from rabbit)
- Ribosomal protein us9 (15 kDa, Protein from rabbit)
- Ribosomal protein ul24 (15 kDa, Protein from rabbit)
- Ribosomal protein ul22 (17 kDa, Protein from rabbit)
- Ribosomal protein ul16 (24 kDa, Protein from rabbit)
- Ribosomal protein us5 (24 kDa, Protein from rabbit)
- Ribosomal protein ul3 (45 kDa, Protein from rabbit)
- Ribosomal protein es26 (11 kDa, Protein from rabbit)
- Ribosomal protein el31 (12 kDa, Protein from rabbit)
- Ribosomal protein es6 (26 kDa, Protein from rabbit)
- Ribosomal protein el43 (10 kDa, Protein from rabbit)
- E/e-site-trna (24 kDa, RNA from baker's yeast)
- Ribosomal protein el36 (11 kDa, Protein from rabbit)
- Ribosomal protein el8 (26 kDa, Protein from rabbit)
- Translocation intermediate ti-post-3 (Complex from Saccharomyces cerevisiae)
- Ribosomal protein rack 1 (34 kDa, Protein from rabbit)
- Ribosomal protein es30 (6 kDa, Protein from rabbit)
- Ribosomal protein es31 (8 kDa, Protein from rabbit)
- Ribosomal protein us19 (14 kDa, Protein from rabbit)
- Ribosomal protein us10 (11 kDa, Protein from rabbit)
- Ribosomal protein us4 (21 kDa, Protein from rabbit)
- Ribosomal protein el22 (11 kDa, Protein from rabbit)
- Ribosomal protein el19 (21 kDa, Protein from rabbit)
- Ribosomal protein es10 (11 kDa, Protein from rabbit)
Nonstop ribosomal complex bound with Dom34 and Hbs1
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 5m1j
Q-score: 0.45
Hilal T, Yamamoto H, Loerke J, Burger J, Mielke T, Spahn CM
Nat Commun (2016) 7 pp. 13521-13521 [ Pubmed: 27995908 DOI: doi:10.1038/ncomms13521 ]
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s15 (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l42-b (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l6-a (19 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s22-a (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l8-a (25 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
- Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Saccharomyces cerevisiae)
- Nonstop mrna (6 kDa, RNA from synthetic construct)
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
- Ubiquitin-40s ribosomal protein s31 (8 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s6-a (25 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s3 (24 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s30-a (6 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s20 (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s0-a (22 kDa, Protein from Saccharomyces cerevisiae)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l34-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l24-a (11 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s1-a (24 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s23-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l41-b (3 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s2 (23 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l7-a (25 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s17-b (14 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s9-a (21 kDa, Protein from Saccharomyces cerevisiae)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 40s ribosomal protein s28-b (7 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l10 (25 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- 40s ribosomal protein s13 (16 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s10-a (11 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s5 (22 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l13-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s12 (13 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s14-a (13 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l14-a (14 kDa, Protein from Saccharomyces cerevisiae)
- Protein dom34 (43 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s26-b (11 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l43-b (9 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
- N-acetyl-l-phenylalanine (207 Da, Ligand)
- 60s ribosomal protein l30 (10 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Nonstop ribosomal complex bound with dom34-hbs1-gmppnp (3 MDa, Complex)
- 60s ribosomal protein l22-a (11 kDa, Protein from Saccharomyces cerevisiae)
- 18s ribosomal rna (579 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s25-a (8 kDa, Protein from Saccharomyces cerevisiae)
- Yeast phe-trna-phe (24 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s18-a (16 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l25 (13 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s29-a (6 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
- Protein hbs1 (68 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)