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sample_name:"5.8S ribosomal RNA" AND database:"EMDB" AND natural_source_ncbi_code:"559292"
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NPC-trapped pre-60S particle

Release date: April 12, 2023
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 8hfr
Q-score: 0.574

Li Z, Chen S, Zhao L, Huang G, Xu H, Yang X, Wang P, Gao N, Sui SF

Nature (2023) 618 pp. 411-418 [ DOI: doi:10.1038/s41586-023-06128-y Pubmed: 37258668 ]

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RNC-SRP early complex

Release date: July 21, 2021
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7obr
Q-score: 0.492

Jomaa A, Eitzinger S, Zhu Z, Chandrasekar S, Kobayashi K, Shan SO, Ban N

Cell Rep (2021) 36 pp. 109350-109350 [ Pubmed: 34260909 DOI: doi:10.1016/j.celrep.2021.109350 ]

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Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Release date: May 19, 2021
Resolution: 2.877 Å
EM Method: Single-particle
Fitted PDBs: 7azy
Q-score: 0.58

Svetlov MS, Koller TO, Meydan S, Shankar V, Klepacki D, Polacek N, Guydosh NR, Vazquez-Laslop N, Wilson DN, Mankin AS

Nat Commun (2021) 12 pp. 2803-2803 [ Pubmed: 33990576 DOI: doi:10.1038/s41467-021-23068-1 ]

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Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Release date: July 11, 2018
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6gq1
Q-score: 0.357

Pellegrino S, Demeshkina N, Mancera-Martinez E, Melnikov S, Simonetti A, Myasnikov A, Yusupov M, Yusupova G, Hashem Y

J Mol Biol (2018) 430 pp. 2677-2687 [ DOI: doi:10.1016/j.jmb.2018.06.006 Pubmed: 29886014 ]

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Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Release date: July 11, 2018
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6gqb
Q-score: 0.386

Pellegrino S, Demeshkina N, Mancera-Martinez E, Melnikov S, Simonetti A, Myasnikov A, Yusupov M, Yusupova G, Hashem Y

J Mol Biol (2018) 430 pp. 2677-2687 [ DOI: doi:10.1016/j.jmb.2018.06.006 Pubmed: 29886014 ]

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Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Release date: Feb. 8, 2017
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 5t62
Q-score: 0.477

Malyutin AG, Musalgaonkar S, Patchett S, Frank J, Johnson AW

EMBO J (2017) 36 pp. 854-868 [ Pubmed: 28179369 DOI: doi:10.15252/embj.201696012 ]

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Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Release date: Feb. 8, 2017
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 5t6r
Q-score: 0.325

Malyutin AG, Musalgaonkar S, Patchett S, Frank J, Johnson AW

EMBO J (2017) 36 pp. 854-868 [ DOI: doi:10.15252/embj.201696012 Pubmed: 28179369 ]

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Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Release date: Jan. 18, 2017
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5mc6
Q-score: 0.362

Schmidt C, Kowalinski E, Shanmuganathan V, Defenouillere Q, Braunger K, Heuer A, Pech M, Namane A, Berninghausen O, Fromont-Racine M, Jacquier A, Conti E, Becker T, Beckmann R

Science (2016) 354 pp. 1431-1433 [ DOI: doi:10.1126/science.aaf7520 Pubmed: 27980209 ]

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Structure of the Kluyveromyces lactis 80S ribosome in complex with the cricket paralysis virus IRES and eEF2

Release date: May 18, 2016
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5it7
Q-score: 0.358

Murray J, Savva CG, Shin BS, Dever TE, Ramakrishnan V, Fernandez IS

eLife (2016) 5 [ Pubmed: 27159451 DOI: doi:10.7554/eLife.13567 ]

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