Drosophila melanogaster Testis polysome ribosome
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 6xu7
Q-score: 0.308
Hopes T, Norris K, Agapiou M, McCarthy CGP, Lewis PA, O'Connell MJ, Fontana J, Aspden JL
Nucleic Acids Res (2022) 50 pp. 2240-2257 [ DOI: doi:10.1093/nar/gkab606 Pubmed: 34283226 ]
- 40s ribosomal protein s18 (16 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l3 (46 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s26 (12 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s7 (22 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l4 (44 kDa, Protein from Drosophila melanogaster)
- Mrna (3 kDa, RNA from Drosophila melanogaster)
- 60s ribosomal protein l13 (24 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l15 (24 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein sa (24 kDa, Protein from Drosophila melanogaster)
- Ribosomal protein l22-like protein (11 kDa, Protein from Drosophila melanogaster)
- Ip17216p (13 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l31 (13 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s3a (25 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s5a (21 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s9 (21 kDa, Protein from Drosophila melanogaster)
- Ribosomal protein l6, isoform a (26 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l10 (25 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l23 (14 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l27a (17 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s13 (17 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l37a (10 kDa, Protein from Drosophila melanogaster)
- 28s ribosomal rna (1 MDa, RNA from Drosophila melanogaster)
- 60s ribosomal protein l13a (23 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l10a-2 (24 kDa, Protein from Drosophila melanogaster)
- Drosophila melanogaster testis polysome ribosome (Complex from Drosophila melanogaster)
- 60s ribosomal protein l9 (21 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l19 (24 kDa, Protein from Drosophila melanogaster)
- Ta01007p (12 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s16 (16 kDa, Protein from Drosophila melanogaster)
- P-trna (24 kDa, RNA from Drosophila melanogaster)
- 40s ribosomal protein s23 (16 kDa, Protein from Drosophila melanogaster)
- Geo07453p1 (15 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s27 (9 kDa, Protein from Drosophila melanogaster)
- Guanine nucleotide-binding protein subunit beta-like protein (35 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l14 (18 kDa, Protein from Drosophila melanogaster)
- Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s2 (24 kDa, Protein from Drosophila melanogaster)
- 2s ribosomal rna (9 kDa, RNA from Drosophila melanogaster)
- 40s ribosomal protein s30 (6 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s12 (13 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l5 (33 kDa, Protein from Drosophila melanogaster)
- Re62581p (18 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s29 (6 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l36 (13 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l39 (6 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s4 (29 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s10b (10 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l18 (21 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l8 (27 kDa, Protein from Drosophila melanogaster)
- Rh48056p (12 kDa, Protein from Drosophila melanogaster)
- Ubiquitin-40s ribosomal protein s27a (9 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s28 (7 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s14a (14 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l27 (15 kDa, Protein from Drosophila melanogaster)
- 5.8s ribosomal rna (39 kDa, RNA from Drosophila melanogaster)
- 60s ribosomal protein l32 (15 kDa, Protein from Drosophila melanogaster)
- 18s ribosomal rna (641 kDa, RNA from Drosophila melanogaster)
- 40s ribosomal protein s8 (23 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l38 (8 kDa, Protein from Drosophila melanogaster)
- Geo07301p1 (14 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l11 (20 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l41 (3 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l17 (21 kDa, Protein from Drosophila melanogaster)
- Probable 60s ribosomal protein l37-b (9 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s21 (8 kDa, Protein from Drosophila melanogaster)
- Re25263p (11 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s6 (26 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l18a (20 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s24 (14 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s17 (14 kDa, Protein from Drosophila melanogaster)
- 5s ribosomal rna (38 kDa, RNA from Drosophila melanogaster)
- 40s ribosomal protein s3 (25 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l28 (14 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s19a (16 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s20 (11 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s11 (18 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l24 (6 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s25 (8 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l29 (8 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s15aa (14 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l7a (27 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l7 (26 kDa, Protein from Drosophila melanogaster)
- Fi02809p (14 kDa, Protein from Drosophila melanogaster)
- Geo07455p1 (17 kDa, Protein from Drosophila melanogaster)
Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7nwh
Q-score: 0.348
Powers KT, Stevenson-Jones F, Yadav SKN, Amthor B, Bufton JC, Borucu U, Shen D, Becker JP, Lavysh D, Hentze MW, Kulozik AE, Neu-Yilik G, Schaffitzel C
Nucleic Acids Res (2021) 49 pp. 7665-7679 [ DOI: doi:10.1093/nar/gkab532 Pubmed: 34157102 ]
- Ribosomal protein el43 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (15 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- Blasticidin s (422 Da, Ligand)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul12 (21 kDa, Protein from Oryctolagus cuniculus)
- El14 (14 kDa, Protein from Oryctolagus cuniculus)
- S7 (21 kDa, Protein from Oryctolagus cuniculus)
- Mrna (4 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s_sa_c domain-containing protein (32 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s17 (16 kDa, Protein from Oryctolagus cuniculus)
- L9 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s26 (13 kDa, Protein from Oryctolagus cuniculus)
- El29 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27a (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- L38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- L7a (27 kDa, Protein from Oryctolagus cuniculus)
- Erf3a (48 kDa, Protein from Oryctolagus cuniculus)
- Epididymis tissue sperm binding protein li 3a (34 kDa, Protein from Oryctolagus cuniculus)
- Mammalian pre-termination 80s ribosome with erf1 and erf3 bound by blasticidin s. (3 MDa, Complex from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- L22 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l24-like protein (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l8 (27 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Us11 (16 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (573 kDa, RNA from Oryctolagus cuniculus)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 40s ribosomal protein us12 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s2 (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- S29 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (30 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s20 (13 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic peptide chain release factor subunit 1 (49 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us13 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (17 kDa, Protein from Oryctolagus cuniculus)
- El42 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (42 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (17 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein el40 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s10 (17 kDa, Protein from Oryctolagus cuniculus)
Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6ip6
Q-score: 0.184
Yokoyama T, Machida K, Iwasaki W, Shigeta T, Nishimoto M, Takahashi M, Sakamoto A, Yonemochi M, Harada Y, Shigematsu H, Shirouzu M, Tadakuma H, Imataka H, Ito T
Mol Cell (2019) 74 pp. 1205-1214.e8 [ Pubmed: 31080011 DOI: doi:10.1016/j.molcel.2019.04.022 ]
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 5.8s ribosomal rna (50 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- Human 80s ribosome (Complex from Homo sapiens)
- 60s ribosomal protein l10-like (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 18s ribosomal rna (602 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- Mrna (1 kDa, RNA from Homo sapiens)
- Nascent peptide (1 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- P-site trna (24 kDa, RNA from Homo sapiens)
- Hcv-ires rna (93 kDa, RNA from Homo sapiens)
- 28s ribosomal rna (1 MDa, RNA from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
- 5s ribosomal rna (38 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)